University of Heidelberg
BIOQUANT

04/01/2021 Open Position

The BMCV group currently offers a PhD position in biomedical image analysis.

More details can be...


01/27/2018 Cell Tracking Challenge, Nature Methods 2017

The cell tracking method of the BMCV group yielded top-ranking results in an international...


07/13/2015 ISBI 2016

Karl Rohr is program chair of the IEEE International Symposium on Biomedical Imaging (ISBI) which...


11/10/2014 Project QuantVessel at Deutsche Bundestag (German Parliament)

The research project QuantVessel of the BMCV group is presented at an exhibition of the German...


11/10/2014 Excellent result at Particle Tracking Challenge, Nature Methods 2014

The Biomedical Computer Vision (BMCV) group successfully participated in an international...


Displaying results 1 to 5 out of 13

1

2

3

Next >

Simon Eck

PhD Student in the Biomedical Computer Vision Group (BMCV) at the University of Heidelberg, BioQuant, IPMB, and the German Cancer Research Center (DKFZ).

Research Interests

  • Segmentation of heterochromatin foci
  • Spherical harmonics shape representation and shape analysis

Publications

Journals

  • S. Eck, S. Wörz, K. Müller-Ott, M. Hahn, A. Biesdorf, G. Schotta, K. Rippe, and K. Rohr, "A Spherical Harmonics Intensity Model for 3D Segmentation and 3D Shape Analysis of Heterochromatin Foci", Medical Image Analysis 32 (2016), pp. 18–31, DOI: 10.1016/j.media.2016.03.001
  • M. Hahn, S. Dambacher, S. Dulev, A.Y. Kuznetsova, S. Eck, S. Wörz, D. Sadic, M. Schulte, J.-P. Mallm, A. Maiser, P. Debs, H. von Melchner, H. Leonhardt, L. Schermelleh, K. Rohr, K. Rippe, Z. Storchova, and G. Schotta, “Suv4-20h2 mediates chromatin compaction and is important for cohesin recruitment to heterochromatin”, Genes & Development 27 (2013) 859-872
  • P. Raiss, B. Sowa, T. Bruckner, S. Eck, S. Wörz, K. Rohr, M. Rickert, and P. Kasten, ''Pressurisation leads to better cement penetration into the glenoid bone: A cadaveric study'', The Journal of Bone and Joint Surgery (Br) 94:5 (2012) 671-677

Conference Proceedings

  • J. Hennies, J.-P. Bergeest, S. Eck, K. Rohr, S. Wörz, "Cell Segmentation and Cell Splitting Based on Gradient Flow Tracking in Microscopic Images", Proc. Workshop Bildverarbeitung für die Medizin 2014 – Algorithmen, Systeme, Anwendungen –, Springer Berlin Heidelberg, pp. 409–414, Aachen, Germany, 2014
  • S. Eck, S. Wörz, K. Müller-Ott, M. Hahn, G. Schotta, K. Rippe, K. Rohr, "3D Shape Analysis of Heterochromatin Foci Based on a 3D Spherical Harmonics Intensity Model", Proc. SPIE Medical Imaging 2014: Image Processing, Volume 9034, SPIE Bellingham, pp. 1484–1487, San Diego, CA/USA, 2014
  • S. Eck, K. Rohr, A. Biesdorf, K. Müller, K. Rippe, and S. Wörz, “A 3D Intensity Model Based on Spherical Harmonics for Automatic 3D Segmentation of Heterochromatin Foci”, Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI’13), pp. 1476–1479, San Francisco, CA/USA, 2013
  • S. Eck, S. Wörz, A. Biesdorf, K. Müller, K. Rippe, and K. Rohr, “Segmentation of Heterochromatin Foci Using a 3D Spherical Harmonics Intensity Model”, Proc. Workshop Bildverarbeitung für die Medizin 2013 – Algorithmen, Systeme, Anwendungen –, Springer Berlin Heidelberg, pp. 308-313, Heidelberg, Germany, 2013
  • S. Eck, K. Rohr, K. Müller, K. Rippe, and S. Wörz, "Combined Model-Based and Region-Adaptive 3D Segmentation and 3D Colocalization Analysis of Heterochromatin Foci'', Proc. Workshop Bildverarbeitung für die Medizin 2012 - Algorithmen, Systeme, Anwendungen -, Springer Berlin Heidelberg, pp. 9-14, Berlin, Germany, 2012

Projects

  • BMBF (SysTec) project EpiSys

Degrees

[2010] Master of Science in Information Technology, Hochschule Mannheim, Germany

[2009] Diploma in Computer Engineering, Hochschule Mannheim, Germany

Contact details:

Bioquant Center

Im Neuenheimer Feld 267
Room-No. 355
69120 Heidelberg

Tel: +49 - (0) 6221 - 54 51305
Email: simon.eck{at}bioquant.uni-heidelberg.de

Contact: E-Mail (Last update: 07/08/2018)