University of Heidelberg
BIOQUANT

03/25/2024 Open Position

The BMCV group currently offers a PhD position in biomedical image analysis.

More details can be...


03/01/2023 Publication in IEEE Transactions on Pattern Analysis and Machine Intelligence 2023

Our article "Superadditivity and Convex Optimization for Globally Optimal Cell Segmentation Using...


01/27/2018 Cell Tracking Challenge, Nature Methods 2017

The cell tracking method of the BMCV group yielded top-ranking results in an international...


07/13/2015 ISBI 2016

Karl Rohr is program chair of the IEEE International Symposium on Biomedical Imaging (ISBI) which...


11/10/2014 Project QuantVessel at Deutsche Bundestag (German Parliament)

The research project QuantVessel of the BMCV group is presented at an exhibition of the German...


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Sommersemester 2024

Project Seminar "Biomedical Image Analysis"

Field:

  Biomedical Image Analysis, Machine Learning

Scope:

  4 SWS

Date:

  Tuesday, 15:00-18:00, weekly

Duration:

  16.4. – 23.7.2024

Place:

  INF 267 (BioQuant), SR44

Lecturer:

  PD Dr. Karl Rohr

Language:

  English

 

Content:

Students work in teams on selected advanced topics in biomedical image analysis. The focus is on on deep learning methods for automated analysis of biological microscopy images and medical images. Examples for topics are segmentation and tracking of cells in microscopy images, segmentation of organs or blood vessels, and registration of multimodal images of the human brain. The course consists of a seminar part (study relevant literature, learn theoretical foundations, oral presentation) and a project part (design and implementation of image analysis methods and algorithms, test and evaluation of implemented methods, specification and development of software, presentation of results, train communicative und social competences). Successful participation in the course can be a starting point for a Master thesis.

 

Course conduction and registration:

The course will be performed onsite. Interested students register for the course in Moodle before the first date (Fakultät für Ingenieurwissenschaften / Pharmazie und Molekulare Biotechnologie / Master: Projektseminar Biomedizinische Bildanalyse 2024). The key for registration in Moodle is 20240310. Information on the meetings will be announced under "Ankündigungen“ in Moodle.

 

Requirements: Basic knowledge in Image Analysis (Computer Vision) or Machine Learning (Pattern Recognition)

Target group: MSc Molecular Biotechnology (8 CP or 4CP), MSc Data and Computer Science (6 CP) and related

First date: Tuesday, 16.4.2024, 15:00 (s.t.), SR44   

Module handbook info: Modulhandbuch

Contact: PD Dr. Karl Rohr (k.rohr{at}dkfz.de, k.rohr{at}uni-heidelberg.de)

 

 

Contact: E-Mail (Last update: 18/04/2024)