2023

Kostrykin L and Rohr K. (2023) Superadditivity and Convex Optimization for Globally Optimal Cell Segmentation using Deformable Shape Models, IEEE Transactions on Pattern Analysis and Machine Intelligence 45:3, 3831-3847

Ritter C, Thielemann R, Lee JY, Pham MT, Bartenschlager R, and Rohr K. (2023) Multi-Channel Colocalization Analysis and Visualization of Viral Proteins in Fluorescence Microscopy Images, IEEE Access 11, 49772-49784

Pham MT, Ritter C, Thielemann R, Meyer J, Haselmann U, Funaya C, Laketa V, Rohr K, and Bartenschlager R. (2023) Endosomal egress and intercellular transmission of hepatic ApoE-containing lipoproteins and its exploitation by the hepatitis C virus, PLOS Pathogens 19:7, e1011052

Pabba MK, Ritter C, Chagin VO, Meyer J, Celikay K, Stear JH, Loerke D, Kolobynina K, Prorok P, Schmid AK, Leonhardt H, Rohr K, and Cardoso MC. (2023) Replisome loading reduces chromatin motion independent of DNA synthesis, eLife 12, RP87572

Iporre-Rivas A, Saur D, Rohr K, Scheuermann G, Gillmann C, Stroke-GFCN: Ischemic Stroke Lesion Prediction with a Fully-Convolutional Graph Network, Journal of Medical Imaging 10:4 (2023) 044502

Spilger R, Pham MT, Pham MT, Bartenschlager R, and Rohr K. (2023) Deep Learning Method for Probabilistic Particle Detection and Tracking in Fluorescence Microscopy Images, International Symposium on Biomedical Imaging (ISBI 2023) Cartagena, Colombia, 18-21 April, 2023, IEEE Piscataway, NJ

2022

Patra P, Beyer K, Jaiswal A, Battista A, Rohr K, Frischknecht F, and Schwarz US. (2022) Collective migration reveals mechanical flexibility of malaria parasites, Nature Physics 18, 586–594

Klein P, Kallenberger SM, Roth H, Roth K, Ly-Hartig TBN, Magg V, Ales J, Talemi SR, Qiang Y, Wolf S, Oleksiuk O, Kurilov R, Di Ventura B, Bartenschlager R, Eils R, Rohr K, Hamprecht FA, Höfer T, Fackler OT, Stoecklin G, and Ruggieri A. (2022) Temporal control of the integrated stress response by a stochastic molecular switch, Science Advances 8:12, eabk2022

Knabbe J, Protzmann J, Schneider N, Berger M, Dannehl D, Wei S, Strahle C, Tegtmeier M, Jaiswal A, Zheng H, Krüger M, Rohr K, Spanagel R, Bilbao A, Engelhardt M, Scholz H, Cambridge SB. (2022) Single-dose ethanol intoxication causes acute and lasting neuronal changes in the brain. PNAS (Proceedings of the National Academy of Sciences) 119:25, e2122477119

Poos AM, Schroeder C, Jaishankar N, Röll D, Oswald M, Meiners J, Braun DM, Knotz C, Frank L, Gunkel M, Spilger R, Wollmann T, Polonski A, Makrypidi-Fraune G, Fraune C, Graefen M, Chung I, Stenzel A, Erfle H, Rohr K, Baniahmad A, Sauter G, Rippe K, Simon R, König R. (2022) PITX1 regulates telomerase in prostate cancer with high prognostic power, Cancers 14, 1267

Bold CS, Baltissen D, Ludewig S, Back MK, Just J, Kilian L, Erdinger S, Banicevic M, Rehra L, Almouhanna F, Nigri M, Wolfer DP, Spilger R, Rohr K, Kann O, Buchholz CJ, von Engelhardt J, Korte M, Müller UC. (2022) APPsα rescues Tau-induced synaptic pathology, Journal of Neuroscience 42:29, 5782-5802

Liu S, Bonalume V, Gao Q, Tsung-Chieh Chen J, Rohr K, Hu J, and Carr R. (2022) Pre-synaptic GABAA in NaV1.8+ primary afferents is required for the development of punctate but not dynamic mechanical allodynia following CFA inflammation, Cells 11, 2390

Wang D, Gao Q, Schaefer I, Moerz H, Hoheisel U, Rohr K, Greffrath W, Treede RD. (2022) TRPM3-mediated dynamic mitochondrial activity in NGF-induced latent sensitization of chronic low back pain, PAIN 163:11, e1115-e1128

Gao Q, Chagin VO, Cardoso MC, and Rohr K. (2022) Quantifying Newly Appearing Replication Foci in Cell Nuclei Based on 3D Non-Rigid Registration, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI 2022), Kolkata, India, March 28-31, 2022, IEEE Piscataway, NJ

Celikay K, Chagin VO, Cardoso MC, and Rohr K. (2022) DenoiseReg: Unsupervised Joint Denoising and Registration of Time-Lapse Live Cell Microscopy Images Using Deep Learning, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI 2022), Kolkata, India, March 28-31, 2022, IEEE Piscataway, NJ

Spilger R, Lee JY, Bartenschlager R, and Rohr K (2022) Deep Neural Network for Combined Particle Tracking and Colocalization Analysis in Two-Channel Microscopy Images, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI 2022), Kolkata, India, March 28-31, 2022, IEEE Piscataway, NJ

Spilger R, Chagin VO, Bold CS, Schermelleh L, Müller UC, Cardoso MC, and Rohr K. (2022) Deep Neural Network for 3D Particle Detection in 3D Fluorescence Microscopy Images via Density Map Regression, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI 2022), Kolkata, India, March 28-31, 2022, IEEE Piscataway, NJ

Yin W, Chagin VO, Cardoso MC, and Rohr K. (2022) Non-rigid registration of temporal live cell microscopy image sequences using deep learning, Medical Imaging: Image Processing (MI 2022), Proc. SPIE International Symposium, SPIE Bellingham, WA/USA, 20.-24. Febr. 2012, San Diego/CA, USA

Qiang Y, He S, Ding R, Zhou Y, Ma K, Hou Y, and Rohr K. (2022) A Framework for Registration of Multi-modal Spatial Transcriptomics Data, Proc. International Conference on Pattern Recognition and Artificial Intelligence (ICPRAI 2022), Paris, France, June 1-3, 2022

Krug C and Rohr K. (2022) Unsupervised Cell Segmentation in Fluorescence Microscopy Images via Self-supervised Learning, Proc. International Conference on Pattern Recognition and Artificial Intelligence (ICPRAI 2022), Paris, France, June 1-3, 2022

Wagner R and Rohr K. (2022) EfficientCellSeg: Efficient Volumetric Cell Segmentation Using Context Aware Pseudocoloring, Proc. Medical Imaging with Deep Learning (MIDL 2022), Zürich, Switzerland, 6 July, 2022, PMLR, 1311-1321

Wagner R and Rohr K. (2022) CellCentroidFormer: Combining Self-attention and Convolution for Cell Detection, Proc. Medical Image Understanding and Analysis (MIUA 2022), Cambridge, UK, July 27–29, 2022, Springer International Publishing, 212-222

2021

C. Ritter, T. Wollmann, J.-Y. Lee, A. Imle, B. Müller, O. T. Fackler, R. Bartenschlager, and K. Rohr. (2021) Data fusion and smoothing for probabilistic tracking of viral structures in fluorescence microscopy images, Medical Image Analysis 73, 102168

T. Wollmann and K. Rohr, Deep Consensus Network: Aggregating predictions to improve object detection in microscopy images. (2021) Medical Image Analysis 70, 102019

R. Spilger, J.Y. Lee, V.O. Chagin, L. Schermelleh, M.C. Cardoso, R. Bartenschlager, and K. Rohr. (2021) Deep Probabilistic Tracking of Particles in Fluorescence Microscopy Images, Medical Image Analysis 72, 102128

L.A. Vale Silva and K. Rohr. (2021) Long-term cancer survival prediction using multimodal deep learning, Nature Scientific Reports 11, 13505

L. Kostrykin, C. Rohr, and K. Rohr. (2021) Globally Optimal and Scalable Video Image Stitching for Robotic Visual Inspection of Electric Generators, Proc. IEEE International Conference on Control, Automation and Systems (ICCAS 2021), Jeju, Republic of Korea, October 12-15, 2021, IEEE Piscataway, NJ, 1141-1145

D. Schacherer, C. Ritter, and K. Rohr. (2021) Multiple Hypothesis Tracking with Integrated Cell Division Detection, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI 2021), Nice, France, April 13-16, 2021, IEEE Piscataway, NJ, 165-168

Q. Gao, V. Chagin, C. Cardoso, and K. Rohr. (2021) Non-Rigid Registration of Live Cell Nuclei Using Global Optical Flow with Elasticity Constraints, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI 2021), Nice, France, April 13-16, 2021, IEEE Piscataway, NJ, 1457-1460

R. Li, Q. Gao, and K. Rohr. (2021) Multi-Object Dynamic Memory Network for Cell Tracking in Time-Lapse Microscopy Images, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI 2021), Nice, France, April 13-16, 2021, IEEE Piscataway, NJ, 1029-1032

C. Ritter, R. Spilger, J.-Y. Lee, R. Bartenschlager, and K. Rohr. (2021) Deep Learning for Particle Detection and Tracking in Fluorescence Microscopy Images, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI 2021), Nice, France, April 13-16, 2021, IEEE Piscataway, NJ, 873-876

2020

R. Spilger, A. Imle, J.-Y. Lee, B. Müller, O.T. Fackler, R. Bartenschlager, and K. Rohr. (2020) A Recurrent Neural Network for Particle Tracking in Microscopy Images Using Future Information, Track Hypotheses, and Multiple Detections, IEEE Transactions on Image Processing 29, 3681-3694

R. Spilger, J. Hellgoth, J.-Y. Lee, S. Hänselmann, D.-P. Herten, R. Bartenschlager, and K. Rohr. (2020) Tracking of Particles in Fluorescence Microscopy Images Using a Spatial Distance Model for Brownian Motion, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI 2020), Iowa City, Iowa, USA, April 3-7, 2020, IEEE Piscataway, NJ, 969-972

L.A. Vale Silva and K. Rohr. (2020) Pan-Cancer Prognosis Prediction Using Multimodal Deep Learning, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI 2020), Iowa City, Iowa, USA, April 3-7, 2020, IEEE Piscataway, NJ, 568-571

C. Ritter, A. Newrly, S. Schifferdecker, I. Roggenbach, B. Müller, and K. Rohr. (2020) Optimizing Particle Detection by Colocalization Analysis in Multi-Channel Fluorescence Microscopy Images, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI 2020), Iowa City, Iowa, USA, April 3-7, 2020, IEEE Piscataway, NJ, 882-885

C. Ritter, T. Wollmann, J.-Y. Lee, R. Bartenschlager, and K. Rohr. (2020) Deep Learning Particle Detection for Probabilistic Tracking in Fluorescence Microscopy Images, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI 2020), Iowa City, Iowa, USA, April 3-7, 2020, IEEE Piscataway, NJ, 977-980

C. Kromm and K. Rohr. (2020) Inception Capsule Network for Retinal Blood Vessel Segmentation and Centerline Extraction, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI 2020), Iowa City, Iowa, USA, April 3-7, 2020, IEEE Piscataway, NJ, 1223-1226

R. Spilger, T. Schwackenhofer, C. Kaspar, I. Bischofs, and K. Rohr. (2020) Deep Segmentation of Bacteria at Different Stages of the Life Cycle, Proc. Workshop Bildverarbeitung für die Medizin (BVM 2020), Berlin, Germany, March 15-17, 2020, Informatik aktuell, Springer-Verlag Berlin Heidelberg 2020, 8-13

2019

Q. Gao and K. Rohr, A Global Method for Non-Rigid Registration of Cell Nuclei in Live Cell Time-Lapse Images, IEEE Transactions on Medical Imaging 38:10 (2019) 2259-2270

L. Kostrykin, C. Schnörr, and K. Rohr, Globally optimal segmentation of cell nuclei in fluorescence microscopy images using shape and intensity information, Medical Image Analysis 58 (2019) 101536

T. Wollmann, M. Gunkel, I. Chung, H. Erfle, K. Rippe, and K. Rohr, GRUU-Net: Integrated convolutional and gated recurrent neural network for cell segmentation, Medical Image Analysis 56 (2019) 68-79

M. Veta, Y.J. Heng, N. Stathonikos, B.E. Bejnordi, F. Beca, T. Wollmann, K. Rohr, M.A. Shah, D. Wang, M. Rousson, M. Hedlund, D. Tellez, F. Ciompi, E. Zerhouni, D. Lanyi, M. Viana, V. Kovalev, V. Liauchuk, H.A. Phoulady, T. Qaiser, S. Graham, N. Rajpoot, E. Sjöblom, J. Molin, K. Paeng, S. Hwang, S. Park, Z. Jia, E.I.-C. Chang, Y. Xu, A.H. Beck, P.J. van Diest, and J.P.W. Pluim, Predicting breast tumor proliferation from whole-slide images: the TUPAC16 challenge, Medical Image Analysis 54 (2019), 111-121

C. Ritter, T. Wollmann, P. Bernhard, M. Gunkel, D. Braun, J.-Y. Lee, J. Meiners, R. Simon, G. Sauter, H. Erfle, K. Rippe, R. Bartenschlager, and K. Rohr, Hyperparameter optimization for image analysis: Application to prostate tissue images and live cell data of virus-infected cells, International Journal of Computer Assisted Radiology and Surgery 14 (2019), 1847-1857

A. Imle, P. Kumberger, N.D. Schnellbächer, J. Fehr, P. Carrillo-Bustamante, J. Ales, P. Schmidt, C. Ritter, W.J. Godinez, B. Müller, K. Rohr, F.A. Hamprecht, U.S. Schwarz, F. Graw, and O.T. Fackler, Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures, Nature Communications 10:2144 (2019)

M. Würtz, D. Aumiller, L. Gundelwein, P. Jung, C. Schütz, K. Lehmann, K. Tóth, and K. Rohr, DNA accessibility of chromatosomes quantified by automated image analysis of AFM data, Nature Scientific Reports 9 (2019) 12788

N. Bopp, L.-M. Scheid, R.H.A. Fink, and K. Rohr, Determination of the Maximum Velocity of Filaments in the In Vitro Motility Assay, Frontiers in Physiology 10:289 (2019)

J.Y. Lee, M. Cortese, U. Haselmann, K. Tabata, I. Romero-Brey, C. Funaya, N.L. Schieber, Y. Qiang, M. Bartenschlager, S. Kallis, C. Ritter, K. Rohr, Y. Schwab, A. Ruggieri, and R. Bartenschlager, Spatiotemporal coupling of the hepatitis C virus replication cycle by creating a lipid droplet-proximal membranous replication compartment, Cell Reports 27:12 (2019) 3602-3617.e5

M.C. Föll, L. Moritz, T. Wollmann, M.N. Stillger, N. Vockert, M. Werner, P. Bronsert, K. Rohr, B.A. Grüning, and O. Schilling, Accessible and reproducible mass spectrometry imaging data analysis in Galaxy, GigaScience 8:12 (2019) giz143

M. Cortese, A. Kumar, P. Matula, L. Kaderali, P. Scaturro, H. Erfle, E.G. Acosta, S. Bühler, L. Chatel-Chaix, K. Rohr, and R. Bartenschlager, Reciprocal effects of fibroblast growth factor receptor signaling on Dengue virus replication and virion production, Cell Reports 27:9 (2019) 2579-2592.e6

C. Melzig, S. Wörz, B. Egenlauf, S. Partovi, K. Rohr, E. Grünig, H.-U. Kauczor, C.P. Heussel, and F. Rengier, Combined automated 3D volumetry by pulmonary CT angiography and echocardiography for detection of pulmonary hypertension, European Radiology 29:11 (2019) 6059–6068

T. Wollmann, C. Ritter, J.-N. Dohrke, J.-Y. Lee, R. Bartenschlager, and K. Rohr, DetNet: Deep neural network for particle detection in microscopy images, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'19), Venice, Italy, April 8-11, 2019, IEEE Piscataway, NJ, 517-520

T. Wollmann, P. Bernhard, M. Gunkel, D.M. Braun, J. Meiners, R. Simon, G. Sauter, H. Erfle, K. Rippe, and K. Rohr, Black-box hyperparameter optimization for nuclei segmentation in prostate tissue images, Proc. Workshop Bildverarbeitung für die Medizin (BVM’19), Lübeck, Germany, March 17-19, 2019, Informatik aktuell, Springer-Verlag Berlin Heidelberg 2019

2018

W. Liao, S. Wörz, C.-K. Kang, Z.-H. Cho, and K. Rohr, Progressive Minimal Path Method for Segmentation of 2D and 3D Line Structures, IEEE Transactions on Pattern Analysis and Machine Intelligence 40:3 (2018) 696-709

D.V. Sorokin, I. Peterlik, M. Tektonidis, K. Rohr, and P. Matula, Non-rigid Contour-Based Registration of Cell Nuclei in 2D Live Cell Microscopy Images Using a Dynamic Elasticity Model, IEEE Transactions on Medical Imaging 37:1 (2018) 173-184

S. Ali, S. Wörz, K. Amunts, R. Eils, M. Axer, and K. Rohr, Rigid and non-rigid registration of polarized light imaging data for 3D reconstruction of the temporal lobe of the human brain at micrometer resolution, NeuroImage 181 (2018) 235–251

A. Mutlu, S. Trauth, M. Ziesack, K. Nagler, J.-P. Bergeest, K. Rohr, N. Becker, T. Höfer, and I.B. Bischofs, Phenotypic memory in Bacillus subtilis links dormancy entry and exit by a spore quantity-quality tradeoff, Nature Communications 9:69 (2018)

D. Bucher, F. Frey, K.A. Sochacki, S. Kummer, J.-P. Bergeest, W.J. Godinez, H.-G. Kräusslich, K. Rohr, J.W. Taraska, U.S. Schwarz, and S. Boulant, Clathrin-adaptor ratio and membrane tension regulate the flat-to-curved transition of the clathrin coat during endocytosis, Nature Communications 9:1109 (2018)

B. Grüning, R. Dale, A. Sjödin, B. A. Chapman, J. Rowe, C. H. Tomkins-Tinch, R. Valieris, A. Caprez, B. Batut, M. Haudgaard, T. Cokelaer, K. A. Beauchamp, B. S. Pedersen, Y. Hoogstrate, D. Ryan, A. Bretaudeau, G. Le Corguille, C. Brueffer, D. Yusuf, S. Luna-Valero, R. Kirchner, K. Brinda, M. Raden, T. Wollmann, J. Köster, et al., Bioconda: A sustainable and comprehensive software distribution for the life sciences, Nature Methods 15 (2018) 475-486

L. Gundelwein, J. Miró, F. Gonzalez Barlatay, C. Lapierre, K. Rohr, and L. Duong, Personalized stent design for congenital heart defects using pulsatile blood flow simulations, Journal of Biomechanics 81 (2018) 68-75

S. Ali, K. Amunts, R. Eils, M. Axer, and K. Rohr, Towards ultra-high resolution 3D reconstruction of a whole rat brain from 3D-PLI data, Proc. MICCAI Internat. Workshop on Connectomics in NeuroImaging (CNI’18), Granada, Spain, September 20, 2018, Lecture Notes in Computer Science, Springer-Verlag Berlin Heidelberg 2018, 1-10

R. Spilger, T. Wollmann, Y. Qiang, A. Imle, J.-Y. Lee, B. Müller, O.T. Fackler, R. Bartenschlager, and K. Rohr, Deep Particle Tracker: Automatic Tracking of Particles in Fluorescence Microscopy Images Using Deep Learning , Proc. MICCAI Internat. Workshop on Deep Learning in Medical Image Analysis (DLMIA'18), Granada, Spain, September 20, 2018, Lecture Notes in Computer Science, Springer-Verlag Berlin Heidelberg 2018, 128-136

L. Kostrykin, C. Schnörr, K. Rohr, Segmentation of cell nuclei using intensity-based model fitting and sequential convex programming, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'18), Washington, D.C., USA, April 4-7, 2018, IEEE Piscataway, NJ, 654-657

C. Ritter, A. Imle, J.Y. Lee, B. Müller, O.T. Fackler, R. Bartenschlager, K. Rohr, Two-filter probabilistic data association for tracking of virus particles in fluorescence microscopy images, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'18), Washington, D.C., USA, April 4-7, 2018, IEEE Piscataway, NJ, 957-960

T. Wollmann, C.S. Eijkman, K. Rohr, Adversarial domain adaptation to improve automatic breast cancer grading in lymph nodes, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'18), Washington, D.C., USA, April 4-7, 2018, IEEE Piscataway, NJ, 582-585

D. Baltissen, T. Wollmann, M. Gunkel, I. Chung, H. Erfle, K. Rippe, K. Rohr, Comparison of segmentation methods for tissue microscopy images of glioblastoma cells, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'18), Washington, D.C., USA, April 4-7, 2018, IEEE Piscataway, NJ, 396-399

S. Ali, K. Amunts, R. Eils, M. Axer, and K. Rohr, Scale-Bundle Spline-Based Non-Rigid Registration for Handling Fissures, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'18), Washington, D.C., USA, April 4-7, 2018, IEEE Piscataway, NJ, 762-765

S. Ali, M. Axer, K. Amunts, R. Eils, and K. Rohr, Evaluating Local Features in High-Resolution 3D-PLI Data, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'18), Washington, D.C., USA, April 4-7, 2018, IEEE Piscataway, NJ, 729-733

Q. Gao, S. Eck, J. Matthias, I. Chung, J. Engelhardt, K. Rippe, and K. Rohr, Bayesian Joint Super-resolution, Deconvolution, and Denoising of Images with Poisson-Gaussian Noise, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'18), Washington, D.C., USA, April 4-7, 2018, IEEE Piscataway, NJ, 938-942

A. Jaiswal, K. Beyer, F. Frischknecht, and K. Rohr, Multi-Channel Boosting and Multi-Scale Localization-Based Tracking of Dense Malarial Sporozoites, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'18), Washington, D.C., USA, April 4-7, 2018, IEEE Piscataway, NJ, 977-980

T. Wollmann, J. Ivanova, M. Gunkel, I. Chung, H. Erfle, K. Rippe, K. Rohr, Multi-channel Deep Transfer Learning for Nuclei Segmentation in Glioblastoma Cell Tissue Images, Proc. Workshop Bildverarbeitung für die Medizin (BVM’18), Erlangen, Germany, March 11-13, 2018, Informatik aktuell, A. Maier et al. (Eds.), Springer-Verlag Berlin Heidelberg 2018, 316-321

S. Ali, D. Lin, M. Axer, and K. Rohr, Comparison of self-similarity measures for multi-modal non-rigid registration of 3D-PLI brain images, Proc. Workshop Bildverarbeitung für die Medizin (BVM’18), Erlangen, Germany, March 11-13, 2018, Informatik aktuell, A. Maier et al. (Eds.), Springer-Verlag Berlin Heidelberg 2018, 49-54

2017

V. Ulman, M. Maška, K.E.G. Magnusson, O. Ronneberger, C. Haubold, N. Harder, Pa. Matula, Pe. Matula, D. Svoboda, M. Radojevic, I. Smal, K. Rohr, J. Jaldén, H.M. Blau, O. Dzyubachyk, B. Lelieveldt, P. Xiao, Y. Li, S.-Y. Cho, A. Dufour, J.C. Olivo-Marin, C.C. Reyes-Aldasoro, J.A. Solis-Lemus, R. Bensch, T. Brox , J. Stegmaier, R. Mikut, S. Wolf, F.A. Hamprecht, T. Esteves, P. Quelhas, Ö. Demirel, L. Malmström, F. Jug, P. Tomančák, E. Meijering, A. Muñoz-Barrutia, M. Kozubek, and C. Ortiz-de-Solorzano, An objective comparison of cell-tracking algorithms, Nature Methods 14 (2017) 1141–1152

M. Tektonidis and K. Rohr, Diffeomorphic Multi-Frame Non-Rigid Registration of Cell Nuclei in 2D and 3D Live Cell Images, IEEE Transactions on Image Processing 26:3 (2017) 1405-1417

L. Nötzold, L. Frank, M. Gandhi, M. Polycarpou-Schwarz, M. Groß, M. Gunkel, N. Beil, H. Erfle, N. Harder, K. Rohr, J. Trendel, J. Krijgsveld, T. Longerich, P. Schirmacher, M. Boutros, S. Erhardt, and S. Diederichs, The long non-coding RNA LINC00152 is essential for cell cycle progression through mitosis in HeLa cells, Nature Scientific Reports 7:2265 (2017)

J. Willemsen, O. Wicht, J.C. Wolanski, N. Baur, S. Bastian, D.A. Haas, P. Matula, B. Knapp, L. Meyniel-Schicklin, C. Wang, R. Bartenschlager, V. Lohmann, K. Rohr, H. Erfle, L. Kaderali, J. Marcotrigiano, A. Pichlmair, and M. Binder, Phosphorylation-Dependent Feedback Inhibition of RIG-I by DAPK1 Identified by Kinome-wide siRNA Screening, Molecular Cell 65 (2017) 1–13

T. Wollmann, H. Erfle, R. Eils, K. Rohr, M. Gunkel, Workflows for Microscopy Image Analysis and Cellular Phenotyping, Journal of Biotechnology 261 (2017) 70-75

M. Gunkel, I. Chung, S. Wörz, K.I. Deeg, R. Simon, G. Sauter, D.T.W. Jones, A. Korshunov, K. Rohr, H. Erfle, and K. Rippe, Quantification of telomere features in tumor tissue sections by an automated 3D imaging-based workflow, Methods 114 (2017) 60–73

P. Hoegen, S. Wörz, M. Müller-Eschner, P. Geisbüsch, W. Liao, K. Rohr, M. Schmitt, F. Rengier, H.-U. Kauczor, H. von Tengg-Kobligk, How Precise Are Preinterventional Measurements Using Centerline Analysis Applications? Objective Ground Truth Evaluation Reveals Software-Specific Centerline Characteristics, Journal of Endovascular Therapy 24:4 (2017) 584-594

A. Wenzel, S. Eck, K. Hülse, K. Rohr, K. Hörmann, C. Umbreit, M. Hülse, and R. Hülse, Development of a new software and test setup for analyzing hVOR in very young children by vHIT, Journal of Vestibular Research 27:2-3 (2017) 155-162

S. Ali, K. Rohr, M. Axer, K. Amunts, R. Eils, and S. Wörz, Registration of ultra-high resolution 3D PLI data of human brain sections to their corresponding high-resolution counterpart, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'17), Melbourne, Australia, April 18-21, 2017

S. Ali, K. Rohr, M. Axer, D. Gräßel, P. Schlömer, K. Amunts, R. Eils, and S. Wörz: Elastic registration of high-resolution 3D PLI data of the human brain, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'17), Melbourne, Australia, April 18-21, 2017

Q. Gao and K. Rohr, Optical flow-based non-rigid registration of cell nuclei: Global model with adaptively weighted regularization, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'17), Melbourne, Australia, April 18-21, 2017

P. Markowsky, S. Reith, T. E. Zuber, R. König, K. Rohr, and C. Schnörr, Segmentation of cell structures using Model-Based Set Covering with iterative reweighting, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'17), Melbourne, Australia, April 18-21, 2017

Y. Qiang, J.-Y. Lee, R. Bartenschlager, and K. Rohr, Colocalization analysis and particle tracking in multi-channel fluorescence microscopy images, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'17), Melbourne, Australia, April 18-21, 2017

T. Wollmann and K. Rohr, Deep residual Hough voting for mitotic cell detection in histopathology images, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'17), Melbourne, Australia, April 18-21, 2017

A. Zern, K. Rohr, and C. Schnörr, Geometric Image Labeling with Global Convex Labeling Constraints, Proc. 11th Internat. Workshop on Energy Minimization Methods in Computer Vision and Pattern Recognition (EMMCVPR’17), Venice, Italy, 30 October - 1 November, 2017, Lecture Notes in Computer Science, Springer-Verlag Berlin Heidelberg 2017, 533-547

S. Ali, K. Rohr, D. Gräßel, P. Schlömer, K. Amunts, R. Eils, M. Axer, and S. Wörz, Spline-Based Multimodal Image Registration of 3D PLI Data of the Human Brain., Proc. Workshop Bildverarbeitung für die Medizin 2017 - Algorithmen, Systeme, Anwendungen -, Heidelberg, Germany, 12.-14. March 2017, Informatik aktuell, K. Maier-Hein et al. (Eds.), Springer-Verlag Berlin Heidelberg 2017

T. Wollmann and K. Rohr, Automatic Grading of Breast Cancer Whole-Slide Histopathology Images, Proc. Workshop Bildverarbeitung für die Medizin 2017 - Algorithmen, Systeme, Anwendungen -, Heidelberg, Germany, 12.-14. March 2017, Informatik aktuell, K. Maier-Hein et al. (Eds.), Springer-Verlag Berlin Heidelberg 2017

2016

S. Eck, S. Wörz, K. Müller-Ott, M. Hahn, A. Biesdorf, G. Schotta, K. Rippe, and K. Rohr, A Spherical Harmonics Intensity Model for 3D Segmentation and 3D Shape Analysis of Heterochromatin Foci, Medical Image Analysis 32 (2016) 18–31
W. Liao, K. Rohr, C.-K. Kang, Z.-H. Cho, and S. Wörz, Automatic 3D Segmentation and Quantification of Lenticulostriate Arteries from High Resolution 7 Tesla MRA Images, IEEE Trans. on Image Processing 25:1 (2016) 400-413
F. Rengier, S. Wörz, C. Melzig, S. Ley, C. Fink, N. Benjamin, S. Partovi, H. von Tengg-Kobligk, K. Rohr, H.-U. Kauczor, and E. Grünig, Automated 3D Volumetry of the Pulmonary Arteries based on Magnetic Resonance Angiography Has Potential for Predicting Pulmonary Hypertension, PLOS ONE 11:9 (2016) e0162516
S. Wörz, J.-P. Schenk, A. Alrajab, H. von Tengg-Kobligk, K. Rohr, and R. Arnold, 3D Geometric Analysis of the Pediatric Aorta in 3D MRA Follow-Up Images with Application to Aortic Coarctation, Methods of Information in Medicine 55:5 (2016) 455-462
L. Zhang, H. Erfle, N. Harder, J. Beneke, N. Beil, R. Bulkescher, K. Rohr, and M. Keese, High-throughput RNAi screening identifies a role for the Osteopontin pathway in proliferation and migration of human aortic smooth muscle cells, Cardiovascular Drugs and Therapy 30:3 (2016) 281-95
S. Wörz, P. Hoegen, W. Liao, M. Müller-Eschner, H.-U. Kauczor, H. von Tengg-Kobligk, and K. Rohr, Framework for Quantitative Evaluation of 3D Vessel Segmentation Approaches using Vascular Phantoms in Conjunction with 3D Landmark Localization and Registration, Medical Imaging 2016 - Image Processing (MI'16), Proc. SPIE Internat. Symposium, 27 Febr. - 3 March 2016, San Diego/CA, USA
M. Bromberger, P. Bastian, J.-P. Bergeest, C. Conrad, V. Heuveline, K. Rohr, and W. Karl, FPGA-Accelerated Richardson-Lucy Deconvolution for 3D Image Data, Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'16), Prague, Czech Republic, April 13-16, 2016
A. Jaiswal, W.J. Godinez, M.J. Lehmann, and K. Rohr, Direct Combination of Multi-Scale Detection and Multi-Frame Association for Tracking of Virus Particles in Microscopy Image Data, Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'16), Prague, Czech Republic, April 13-16, 2016

2015

W.J. Godinez and K. Rohr, Tracking Multiple Particles in Fluorescence Time-Lapse Microscopy Images via Probabilistic Data Association, IEEE Trans. on Medical Imaging 34:2 (2015) 415-432
M. Tektonidis, I.-H. Kim, Y.-C. Chen, R. Eils, D. Spector, and K. Rohr, Non-Rigid Multi-Frame Registration of Cell Nuclei in Live Cell Fluorescence Microscopy Image Data, Medical Image Analysis 19 (2015) 1-14
N. Harder, R. Batra, N. Diessl, S. Gogolin, R. Eils, F. Westermann, R. König, and K. Rohr, Large-scale tracking and classification for automatic analysis of cell migration and proliferation, and experimental optimization of high-throughput screens of neuroblastoma cells, Cytometry: Part A 87:6 (2015) 524-540
A. Jaiswal, W.J. Godinez, R. Eils, M.J. Lehmann, and K. Rohr, Tracking Virus Particles in Fluorescence Microscopy Images Using Multi-Scale Detection and Multi-Frame Association, IEEE Trans. on Image Processing 24:11 (2015) 4122-4136
K. Stepka, Pa. Matula, Pe. Matula, S. Wörz, K. Rohr, and M. Kozubek, Performance and Sensitivity Evaluation of 3D Spot Detection Methods in Confocal Microscopy, Cytometry: Part A 87:8 (2015) 759-772
C.J. Zepeda-Mendoza, S. Mukhopadhyay, E.S. Wong, N. Harder, E. Splinter, E. de Wit, M.A. Eckersley-Maslin, T. Ried, R. Eils, K. Rohr, A. Mills, W. de Laat, P. Flicek, A.M. Sengupta, and D.L. Spector, Quantitative analysis of chromatin interactions upon copy number variation at mouse 4E2, BMC Genomics 16:982 (2015)
S. Osterwald, K.I. Deeg, I. Chung, D. Parisotto, S. Wörz, K. Rohr, H. Erfle, and K. Rippe, PML induces compaction, TRF2 depletion and DNA damage signaling at telomeres and promotes their alternative lengthening, Journal of Cell Science 128:10 (2015) 1887-1900
B. Schmid, M. Rinas, A. Ruggieri, E. Acosta, M. Bartenschlager, A. Reuter, W. Fischl, N. Harder, J.-P. Bergeest, M. Flossdorf, K. Rohr, T. Höfer, and R. Bartenschlager, Live cell analysis and mathematical modeling identify determinants of attenuation of Dengue virus 2'-O-methylation mutant, PLOS Pathogens 11:12 (2015) e1005345
H. Erfle, K. Pashayeva, N. Harder, L. Zhang, K. Rohr, D. Schadendorf, S. Ugurel, and M. Keese, Targeting mitosis-regulating genes in cisplatin sensitive and resistant melanoma cells: a live-cell RNAi screen displays differential nucleus-derived phenotypes, Biotechnology Journal 10:9 (2015) 1467-1477
C. Hölscher, F. Sonntag, K. Henrich, Q. Chen, J. Beneke, P. Matula, K. Rohr, L. Kaderali, N. Beil, H. Erfle, J. Kleinschmidt, and M. Müller, The SUMOylation pathway restricts gene transduction by adeno-associated viruses, PLOS Pathogens 11:12 (2015) e1005281
D. Kotelis, C. Brenke, S. Wörz, F. Rengier, K. Rohr, H.-U. Kauczor, D. Böckler, and H. von Tengg-Kobligk, Aortic morphometry at endograft position as assessed by 3D image analysis affects risk of endoleak type I formation after TEVAR, Langenbecks Archives of Surgery 400:4 (2015) 523-529
C. Liesche, K.S. Grußmayer, M. Ludwig, S. Wörz, K. Rohr, D.P. Herten, J. Beaudouin, and R. Eils, Automated Analysis of Single Molecule Photobleaching Data by Statistical Modeling of Spot Populations, Biophysical Journal 109:11 (2015) 2352–2362
W.J. Godinez and K. Rohr, Tracking Virus Particles in Fluorescence Microscopy Images via a Particle Kalman Filter, Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'15), New York/NY, USA, April 16-19, 2015
A. Biesdorf, S. Wörz, H. von Tengg-Kobligk, K. Rohr, and C. Schnörr, 3D Segmentation of Vessels by Incremental Implicit Polynomial Fitting and Convex Optimization, Proc. IEEE Internat. Symposium on Biomedical Imaging (ISBI'15), New York, NY, USA, April 16-19, 2015, IEEE Piscataway, NJ, 1540-1543

S. Wörz, H. von Tengg-Kobligk, and K. Rohr, 3D Statistical Models Of The Aorta And The Supra-Aortic Branches, Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'15), New York/NY, USA, April 16-19, 2015
W.J. Godinez, K. Lymperopoulos, D.-P. Herten, and K. Rohr, Motion Analysis of Receptors and Ligands in High Resolution Fluorescence Microscopy Images, Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'15), New York/NY, USA, April 16-19, 2015
V. Liluashvili, J.-P. Bergeest, N. Harder, M. Ziesack, A. Mutlu, I.B. Bischofs, and K. Rohr, Automatic Single-Cell Segmentation and Tracking of Bacterial Cells in Fluorescence Microscopy Images, Proc. Workshop Bildverarbeitung für die Medizin 2015 - Algorithmen, Systeme, Anwendungen -, Lübeck, Germany, 15.-17. March 2015, Informatik aktuell, H. Handels et al. (Eds.), Springer-Verlag Berlin Heidelberg 2015

2014

N. Chenouard, I. Smal, F. de Chaumont, M. Maška, I.F. Sbalzarini, Y. Gong, J. Cardinale, C. Carthel, S. Coraluppi, M. Winter, A.R. Cohen, W.J. Godinez, K. Rohr, Y. Kalaidzidis, L. Liang, J. Duncan, H. Shen, Y. Xu, K.E.G. Magnusson, J. Jaldén, H.M. Blau, P. Paul-Gilloteaux, P. Roudot, C. Kervrann, F. Waharte, J.-Y. Tinevez, S.L. Shorte, J. Willemse, K. Celler, G.P. van Wezel, H.-W. Dan, Y.-S. Tsai, C. Ortiz de Solórzano, J.-C. Olivo-Marin, and E. Meijering, “Objective comparison of particle tracking methods”, Nature Methods 11:3 (2014) 281-289
M. Maška, V. Ulman, D. Svoboda, Pa. Matula, Pe. Matula, C. Ederra, A. Urbiola, T. España, S. Venkatesan, D.M.W. Balak, P. Karas, T. Bolcková, M. Štreitová, C. Carthel, S. Coraluppi, N. Harder, K. Rohr, K.E.G. Magnusson, J. Jaldén, H.M. Blau, O. Dzyubachyk, P. Křížek, G.M. Hagen, D. Pastor-Escuredo, D. Jimenez-Carretero, M.J. Ledesma-Carbayo, A. Muñoz-Barrutia, E. Meijering, M. Kozubek, and C. Ortiz de Solórzano, "A benchmark for comparison of cell tracking algorithms", Bioinformatics 30:11 (2014) 1609–1617
S. Wörz and K. Rohr, "Spline-Based Hybrid Image Registration using Landmark and Intensity Information based on Matrix-Valued Non-Radial Basis Functions", Internat. J. of Computer Vision 106:1 (2014) 76-92
M. Müller-Eschner, T. Müller, A. Biesdorf, S. Wörz, F. Rengier, D. Böckler, H.-U. Kauczor, K. Rohr, and H. von Tengg-Kobligk, 3D morphometry using automated aortic segmentation in native MR angiography: An alternative to contrast enhanced MRA?, Cardiovascular Diagnosis and Therapy 4:2 (2014) 80-87
T.F. Weber, T. Müller, A. Biesdorf, S. Wörz, F. Rengier, T. Heye, T. Holland-Letz, K. Rohr, H.-U. Kauczor, and H. von Tengg-Kobligk, True four-dimensional analysis of thoracic aortic displacement and distension using model-based segmentation of computed tomography angiography, International Journal of Cardiovascular Imaging 30:1 (2014) 185-194
S. Rahman, P. Koch, J. Weichsel, W.J. Godinez, U. Schwarz, K. Rohr, D. Lamb, H.-G. Kräusslich, and B. Müller, Investigating the role of F-actin in human immunodeficiency virus assembly by live-cell microscopy, Journal of Virology (2014)
A. Runge, J. Hu, M. Wieland, J.-P. Bergeest, C. Mogler, C. Géraud, B. Arnold, K. Rohr, D. Komljenovic, P. Schirmacher, S. Goerdt, H.G. Augustin, An inducible hepatocellular carcinoma model for preclinical evaluation of anti-angiogenic therapy in adult mice, Cancer Research (2014), DOI: 10.1158/0008-5472.CAN-13-2311
A. Suratanee, M.H. Schaefer, M.J. Betts, Z. Soons, H. Mannsperger, N. Harder, M. Oswald, M. Gipp, E. Ramminger, G. Marcus, R. Männer, K. Rohr, E. Wanker, R. Russel, M.A. Andrade-Navarro, R. Eils, and R. König, Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen, PLOS Computational Biology 10:9 (2014) e1003814
S. Wörz, A. Alrajab, R. Arnold, J. Eichhorn, H. von Tengg-Kobligk, J.-P. Schenk, and K. Rohr, 3D geometric analysis of the aorta in 3D MRA follow-up pediatric image data, Medical Imaging 2014 - Image Processing (MI'14), Proc. SPIE Internat. Symposium, Febr. 16-20, 2014, San Diego/CA, USA
S. Eck, S. Wörz , K. Müller-Ott, M. Hahn, G. Schotta, K. Rippe, and K. Rohr, 3D shape analysis of heterochromatin foci based on a 3D spherical harmonics intensity model, Medical Imaging 2014 - Image Processing (MI'14), Proc. SPIE Internat. Symposium, Febr. 16-20, 2014, San Diego/CA, USA
D.V. Sorokin, M. Tektonidis, K. Rohr, and P. Matula, Non-Rigid Contour-Based Temporal Registration Of 2D Cell Nuclei Images Using The Navier Equation, Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'14), Beijing, China, 28 April - 2 May, 2014
J.-P. Bergeest and K. Rohr, Segmentation of Cell Nuclei in 3D Microscopy Images Based on Level Set Deformable Models and Convex Minimization, Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'14), Beijing, China, 28 April - 2 May, 2014
J. Hennies, J.-P. Bergeest, S. Eck, K. Rohr, and S. Wörz, Cell Segmentation and Cell Splitting Based on Gradient Flow Tracking in Microscopic Images, Proc. Workshop Bildverarbeitung für die Medizin 2014 - Algorithmen, Systeme, Anwendungen -, Aachen, Germany, 16.-18. March 2014, Informatik aktuell, T.M. Deserno, H. Handels, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2014, 409-414
S. Wörz, A. Alrajab, R. Arnold, J. Eichhorn, H. von Tengg-Kobligk, J.-P. Schenk, and K. Rohr, 3D Quantification of the Aortic Morphology in Follow-Up 3D MRA Images of Children, Proc. Workshop Bildverarbeitung für die Medizin 2014 - Algorithmen, Systeme, Anwendungen, Aachen, Germany, 16.-18. March 2014, Informatik aktuell, T.M. Deserno, H. Handels, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2014, 192-197

2013

B. Di Ventura, B. Knecht, H. Andreas, W.J. Godinez, M. Fritsche, K. Rohr, W. Nickel, D.W. Heermann, and V. Sourjik, “Chromosome segregation by the Escherichia coli Min system”, Molecular Systems Biology 9:686 (2013)
M. Hahn, S. Dambacher, S. Dulev, A.Y. Kuznetsova, S. Eck, S. Wörz, D. Sadic, M. Schulte, J.-P. Mallm, A. Maiser, P. Debs, H. von Melchner, H. Leonhardt, L. Schermelleh, K. Rohr, K. Rippe, Z. Storchova, and G. Schotta, “Suv4-20h2 mediates chromatin compaction and is important for cohesin recruitment to heterochromatin”, Genes & Development 27 (2013) 859-872
S. Pinto, C. Michel, H. Schmidt-Glenewinkel, N. Harder, K. Rohr, S. Wild, B. Brors, and B. Kyewski, ”Overlapping gene co-expression patterns in human medullary thymic epithelial cells generate self-antigen diversity”, PNAS (Proceedings of the National Academy of Sciences) 110:37 (2013) E3497-E3505
A. Marx, W.J. Godinez, V. Tsimashchuk, P. Bankhead, K. Rohr, and U. Engel, “Xenopus cytoplasmic linker associated protein 1 (XCLASP1) promotes axon elongation and advance of pioneer microtubules”, Molecular Biology of the Cell 24:10 (2013) 1544-58
S. Schmitt, K. Safferling, K. Westphal, M. Hrabowski, U. Müller, P. Angel, L. Wiechert, S. Holland-Cunz, D. Stichel, N. Harder, K. Rohr, G. Germann, F. Matthäus, P. Schirmacher, N. Grabe, and K. Breuhahn, “Stathmin regulates keratinocyte proliferation and migration during cutaneous regeneration”, PLoS ONE 8:9 (2013)
S. Gogolin, R. Batra, N. Harder, V. Ehemann, T. Paffhausen, N. Diessl, V. Sagulenko, A. Brenner, S. Gade, I. Nolte, K. Rohr, R. König, and F. Westermann, “MYCN-mediated overexpression of mitotic spindle regulatory genes and loss of p53-p21 function jointly support the survival of tetraploid neuroblastoma cells”, Cancer Letters 331:1 (2013) 35-45
S. Eck, K. Rohr, A. Biesdorf, K. Müller, K. Rippe, and S. Wörz, “A 3D Intensity Model Based on Spherical Harmonics for Automatic 3D Segmentation of Heterochromatin Foci”, Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI’13), San Francisco, CA, USA, April 7-13, 2013
W. Liao, S. Wörz, and K. Rohr, “Globally Minimal Path Method Using Dynamic Speed Functions Based on Progressive Wave Propagation”, Proc. 11th Asian Conference on Computer Vision (ACCV’12), Daejeon, Korea, 5-9 Nov., 2012, Lecture Notes in Computer Science 7725, ACCV 2012, Part II, K.M. Lee et al. (Eds.), Springer-Verlag Berlin Heidelberg 2013, 25-37
S. Eck, S. Wörz, A. Biesdorf, K. Müller, K. Rippe, and K. Rohr, “Segmentation of Heterochromatin Foci Using a 3D Spherical Harmonics Intensity Model”, Proc. Workshop Bildverarbeitung für die Medizin 2013 – Algorithmen, Systeme, Anwendungen –, Berlin, Germany, 3.-5. March 2013, Informatik aktuell, H.-P. Meinzer, T.M. Deserno, H. Handels, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2013, 308-313

2012

W.J. Godinez, M. Lampe, P. Koch, R. Eils, B. Müller, and K. Rohr, ``Identifying Virus-Cell Fusion in Two-Channel Fluorescence Microscopy Image Sequences Based on a Layered Probabilistic Approach'', IEEE Trans. on Medical Imaging 31:9 (2012) 1786-1808
A. Biesdorf, K. Rohr, D. Feng, H. von Tengg-Kobligk, F. Rengier, D. Böckler, H.-U. Kauczor, and S. Wörz, ``Segmentation and Quantification of the Aortic Arch using Joint 3D Model-Based Segmentation and Elastic Image Registration'', Medical Image Analysis 16:6 (2012) 1187-201
J.-P. Bergeest and K. Rohr, ``Efficient Globally Optimal Segmentation of Cells in Fluorescence Microscopy Images Using Level Sets and Convex Energy Functionals'', Medical Image Analysis 16:7 (2012) 1436-44
A. Ruggieri, E. Dazert, P. Metz, S. Hofmann, J.-P. Bergeest, J. Mazur, M.-S. Hiet, S. Kallis, C.E. Samuel, V. Lohmann, L. Kaderali, K. Rohr, M. Frese, G. Stoecklin, and R. Bartenschlager, ''Dynamic oscillation of translation and stress granule formation mark the cellular response to virus infection'', Cell Host & Microbe 12:1 (2012) 71-85
S. Osterwald, S. Wörz, J. Reymann, F. Sieckmann, K. Rohr, H. Erfle, and K. Rippe, ''A three-dimensional colocalization RNA interference screening platform to elucidate the alternative lengthening of telomeres pathway'', Biotechnology Journal 7 (2012) 103-116
C.-K. Kang, S. Wörz, W. Liao, C.-A. Park, Y.-B. Kim, C.-W. Park, Y.-B. Lee, K. Rohr, and Z.-H. Cho, ''3D Model-Based Analysis of the Lenticulostriate Arteries and Identification of the Vessels Correlated to the Infarct Area: Preliminary Results'', International Journal of Stroke 7:7 (2012) 558-563
T. Lisauskas, P. Matula, C. Claas, S. Reusing, S. Wiemann, H. Erfle, L. Lehmann, P. Fischer, R. Eils, K. Rohr, B. Storrie, and V. Starkuviene, ``Live cell assays to identify regulators of ER to Golgi trafficking'', Traffic 13:3 (2012) 416-432
P. Raiss, B. Sowa, T. Bruckner, S. Eck, S. Wörz, K. Rohr, M. Rickert, and P. Kasten, ''Pressurisation leads to better cement penetration into the glenoid bone: A cadaveric study'', The Journal of Bone and Joint Surgery (Br) 94:5 (2012) 671-677
R. Batra, N. Harder, S. Gogolin, N. Diessl, R. Eils, F. Westermann, K. Rohr, and R. König, ``Time lapse imaging of neuroblastoma cells to determine cell fate upon gene knockdown images'', PLoS ONE 7:12 (2012) e50988
A. Serva, B. Knapp, Y.-T. Tsai, C. Claas, T. Lisauskas, P. Matula, N. Harder, L. Kaderali, K. Rohr, H. Erfle, R. Eils, V. Braga, and V. Starkuviene, ``miR-17-5p regulates endocytic trafficking through targeting TBC1D2/ Armus'', PLoS ONE 7:12 (2012) e52555
W. Liao, S. Wörz, and K. Rohr, ``Vessel segmentation using an iterative fast marching approach with directional prior'', Medical Imaging 2012 - Image Processing (MI'12), Proc. SPIE Internat. Symposium, Febr. 4-9, 2012, San Diego/CA, USA
M. Tektonidis, I.-H. Kim, and K. Rohr, ``Non-Rigid Multi-Frame Registration Of Live Cell Microscopy Images'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'12), Barcelona, Spain, 2-5 May, 2012, 438-441
K. Rohr and S. Wörz, ``An Extension of Thin-Plate Splines for Image Registration with Radial Basis Functions'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'12), Barcelona, Spain, 2-5 May, 2012, 442-445
N. Harder, R. Batra, S. Gogolin, N. Diessl, R. Eils, F. Westermann, R. König, and K. Rohr, ``Cell Tracking for Automatic Migration and Proliferation Analysis in High-Throughput Screens'', Proc. Workshop Bildverarbeitung für die Medizin 2012 - Algorithmen, Systeme, Anwendungen -, Berlin, Germany, 18.-20. March 2012, Informatik aktuell, T. Tolxdorff, T.M. Deserno, H. Handels, and H.-P. Meinzer (Eds.), Springer-Verlag Berlin Heidelberg 2012, 243-248
A. Jaiswal, W.J. Godinez, R. Eils, M.J. Lehmann, and K. Rohr, ``Tracking Virus Particles in Microscopy Images Using Multi-frame Association'', Proc. Workshop Bildverarbeitung für die Medizin 2012 - Algorithmen, Systeme, Anwendungen -, Berlin, Germany, 18.-20. March 2012, Informatik aktuell, T. Tolxdorff, T.M. Deserno, H. Handels, and H.-P. Meinzer (Eds.), Springer-Verlag Berlin Heidelberg 2012, 231-236
S. Eck, K. Rohr, K. Müller, K. Rippe, and S. Wörz, ``Combined Model-Based and Region-Adaptive 3D Segmentation and 3D Colocalization Analysis of Heterochromatin Foci'', Proc. Workshop Bildverarbeitung für die Medizin 2012 - Algorithmen, Systeme, Anwendungen -, Berlin, Germany, 18.-20. March 2012, Informatik aktuell, T. Tolxdorff, T.M. Deserno, H. Handels, and H.-P. Meinzer (Eds.), Springer-Verlag Berlin Heidelberg 2012, 9-14

2011

I.-H. Kim, Y.-C. Chen, D. Spector, R. Eils, and K. Rohr, ``Non-Rigid Registration of 2D and 3D Dynamic Cell Nuclei Images for Improved Classification of Subcellular Particle Motion'', IEEE Trans. on Image Processing 20:4 (2011) 1011-1022

S. Reiss, I. Rebhan, P. Backes, I. Romero-Brey, H. Erfle, P. Matula, L. Kaderali, M. Poenisch, H. Blankenburg, M.-S. Hiet, T. Longerich, S. Diehl, F. Ramirez, T. Balla, K. Rohr, A. Kaul,, S. Bühler, R. Pepperkok, T. Lengauer, M. Albrecht, R. Eils, P. Schirmacher, V. Lohmann, and R. Bartenschlager, ``Recruitment and activation of a lipid kinase by NS5A of the hepatitis C virus is essential for the integrity of the membranous replication compartment'', Cell Host & Microbe 9:1 (2011) 32-45

L. Chang, W.J. Godinez, I.-H. Kim, M. Tektonidis, P. deLanerolle, R. Eils, K. Rohr, and D.M. Knipe, ``Herpesviral Replication Compartments Move and Coalesce at Nuclear Speckles to Enhance Export of Viral Late mRNA'', PNAS (Proceedings of the National Academy of Sciences) 108:21 (2011) E136-E144

F. Rengier, S. Wörz, W.J. Godinez, D. Böckler, K. Rohr, H.-U. Kauczor, and H. von Tengg-Kobligk, ``Development of In Vivo Quantitative Geometric Mapping of the Aortic Arch for Advanced Endovascular Aortic Repair: Feasibility and Preliminary Results'', Journal of Vascular and Interventional Radiology 22:7 (2011) 980-986

B. Knapp, I. Rebhan, A. Kumar, P. Matula, N.A. Kiani, M. Binder, H. Erfle, K. Rohr, R. Eils, R. Bartenschlager, and L. Kaderali, ``Normalizing for Individual Cell Population Context in the Analysis of high-content Cellular Screens'', BMC Bioinformatics 12:485 (2011)

S. Yang, D. Illner, K. Teller, I. Solovei, R. van Driel, B. Joffe, T. Cremer, R. Eils, and K. Rohr, ``Statistical Shape Theory and Registration Methods for Analyzing the 3D Architecture of Chromatin in Interphase Cell Nuclei'', Advances in Nuclear Architecture, N.M. Adams and P.S. Freemont (Eds.), Springer Dordrecht Heidelberg London New York 2011, 131-147

N. Harder, M. Bodnar, R. Eils, D.L. Spector, and K. Rohr, ``3D Segmentation and Quantification of Mouse Embryonic Stem Cells in Fluorescence Microscopy Images'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'11), Chicago, Illinois, USA, 30 March - 2 April, 2011, 216-219

I.-H. Kim, C. Cadmus, A.C. Pfeifer, U. Klingmüller, R. Eils, and K. Rohr, ``Quantification of FRAP Experiments in Live Cell Image Sequences by Combining Segmentation and Registration'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'11), Chicago, Illinois, USA, 30 March - 2 April, 2011, 212-215

W. Liao, K. Rohr, C.-K. Kang, Z.-H. Cho, and S. Wörz, ``A Generative MRF Approach for Automatic 3D Segmentation of Cerebral Vasculature from 7 Tesla MRA Images'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'11), Chicago, Illinois, USA, 30 March - 2 April, 2011, 2041-2043

W.J. Godinez, M. Lampe, R. Eils, B. Müller, and K. Rohr, ``Tracking Multiple Particles In Fluorescence Microscopy Images Via Probabilistic Data Association'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'11), Chicago, Illinois, USA, 30 March - 2 April, 2011, 1925-1928

A. Biesdorf, S. Wörz, T. Müller, T.F. Weber, T. Heye, W. Hosch, H. von Tengg-Kobligk, and K. Rohr, ``Model-Based Segmentation and Motion Analysis of the Thoracic Aorta from 4D ECG-Gated CTA Images'', Proc. 14th Internat. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'2011), Toronto, Canada, 18-22 Sept. 2011, Lecture Notes in Computer Science 6891, Part I, G. Fichtinger, A. Martel, and T. Peters (Eds.), Springer-Verlag Berlin Heidelberg 2011, 589-596

J.-P. Bergeest and K. Rohr, ``Fast Globally Optimal Segmentation of Cells in Fluorescence Microscopy Images'', Proc. 14th Internat. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'2011), Toronto, Canada, 18-22 Sept. 2011, Lecture Notes in Computer Science 6891, Part I, G. Fichtinger, A. Martel, and T. Peters (Eds.), Springer-Verlag Berlin Heidelberg 2011, 645-652

N. Harder, R. Batra, S. Gogolin, N. Diessl, R. Eils, F. Westermann, R. König, and K. Rohr, ``Large-Scale Tracking for Cell Migration and Proliferation Analysis and Experimental Optimization of High-Throughput Screens'', Sixth International Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB'2011), 2. Sept. 2011, University of Heidelberg, Germany, 2011

P. Matula, T. Lisauskas, V. Starkuviene, and K. Rohr, ``Quantification of Golgi Complex Assembly and Disassembly in Live Cell Fluorescence Microscopy Images'', Sixth International Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB'2011), 2. Sept. 2011, University of Heidelberg, Germany, 2011

S. Wörz , E. Reinz, A. Alonso, and K. Rohr, ``3D Model-Based Quantification of EGF Receptor Internalization from Three-Channel 3D Microscopy Images'', Sixth International Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB'2011), 2. Sept. 2011, University of Heidelberg, Germany, 2011

A. Biesdorf, K. Rohr, H. von Tengg-Kobligk, and S. Wörz, ``Aortic Arch Quantification using Efficient Joint Segmentation and Registration'', Proc. Workshop Bildverarbeitung für die Medizin 2011 - Algorithmen, Systeme, Anwendungen -, Lübeck, Germany, 20.-22. March 2011, Informatik aktuell, H. Handels, J. Ehrhardt, T.M. Deserno, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2011, 279-283

S. Wörz, H. von Tengg-Kobligk, and K. Rohr, ``Model-Based Quantification of Small Tubular Structures in 3D Vascular Images'', Proc. Workshop Bildverarbeitung für die Medizin 2011 - Algorithmen, Systeme, Anwendungen -, Lübeck, Germany, 20.-22. March 2011, Informatik aktuell, H. Handels, J. Ehrhardt, T.M. Deserno, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2011, 23-27

N. Harder, M. Bodnar, R. Eils, D.L. Spector, and K. Rohr, ``3D Segmentation and Quantification of Mouse Embryonic Stem Cells in Fluorescence Microscopy Images'', Proc. Workshop Bildverarbeitung für die Medizin 2011 - Algorithmen, Systeme, Anwendungen -, Lübeck, Germany, 20.-22. March 2011, Informatik aktuell, H. Handels, J. Ehrhardt, T.M. Deserno, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2011, 34-38

2010

S. Wörz, P. Sander, M. Pfannmöller, R.J. Rieker, S. Joos, G. Mechtersheimer, P. Boukamp, P. Lichter, and K. Rohr, ``3D Geometry-Based Quantification of Colocalizations in Multi-Channel 3D Microscopy Images of Human Soft Tissue Tumors'', IEEE Trans. on Medical Imaging 29:8 (2010) 1474-1484

A. Suratanee, I. Rebhan, P. Matula, A. Kumar, L. Kaderali, K. Rohr, R. Bartenschlager, R. Eils, and R. König, ``Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening images'', Bioinformatics 26:18 (2010) i653-i658

M. Thomas, M. Felcht, K. Kruse, S. Kretschmer, C. Deppermann, A. Biesdorf, K. Rohr, A.V. Benest, U. Fiedler, H.G. Augustin, ``Angiopoietin-2 stimulation of endothelial cells induces alphavbeta3 integrin internalization and degradation'', J. of Biological Chemistry 285:31 (2010) 23842-23849

S. Wörz, H. von Tengg-Kobligk, V. Henninger, F. Rengier, H. Schumacher, D. Böckler, H.-U. Kauczor, and K. Rohr, ``3D Quantification of the Aortic Arch Morphology in 3D CTA Data for Endovascular Aortic Repair'', IEEE Trans. on Biomedical Engineering 57:10 (2010) 2359-2368

K. Rohr, W.J. Godinez, N. Harder, S. Wörz, J. Mattes, W. Tvaruskó, R. Eils, Chapter 13 in Live Cell Imaging, 2nd edition, R. Goldman, J. Swedlow, and D. Spector (Eds.), ``Tracking and Quantitative Analysis of Dynamic Movements of Cells and Particles'', Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York 2010, 239-256

K. Rohr, W.J. Godinez, N. Harder, S. Yang, I.-H. Kim, S. Wörz, R. Eils, ``Tracking and Registration for Multidimensional Biomedical Image Analysis'', Progress in Industrial Mathematics at ECMI 2008, Mathematics in Industry 15, A.D. Fitt, J. Norbury, H. Ockendon, E. Wilson (Eds.), Springer-Verlag Berlin Heidelberg 2010, 229-234

A. Biesdorf, K. Rohr, H. von Tengg-Kobligk, and S. Wörz, ``Combined Model-Based Segmentation and Elastic Registration for Accurate Quantification of the Aortic Arch'', Proc. 13th Internat. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'2010), Beijing, China, 20-24 Sept. 2010, Lecture Notes in Computer Science, Springer-Verlag Berlin Heidelberg 2010

S. Wörz, H. von Tengg-Kobligk, and K. Rohr, ``A new 3D tubular intensity model for quantification of thin vessels in 3D tomographic images'', Medical Imaging 2010 - Image Processing (MI'10), Proc. SPIE Internat. Symposium, Febr. 13-18, 2010, San Diego/CA, USA

S. Wörz, P. Sander, M. Pfannmöller, R.J. Rieker, S. Joos, G. Mechtersheimer, P. Boukamp, P. Lichter, and K. Rohr, ``3D geometry-based quantification of colocalizations in three-channel 3D microscopy images of soft tissue tumors'', Medical Imaging 2010 - Biomedical Applications in Molecular, Structural, and Functional Imaging (MI'10), Proc. SPIE Internat. Symposium, Febr. 13-18, 2010, San Diego/CA, USA

P. Matula, F. Verissimo, S. Wörz, R. Eils, R. Pepperkok, and K. Rohr, ``Quantification of fluorescent spots in time series of 3D confocal microscopy images of endoplasmic reticulum exit sites based on the HMAX transform'', Medical Imaging 2010 - Biomedical Applications in Molecular, Structural, and Functional Imaging (MI'10), Proc. SPIE Internat. Symposium, Febr. 13-18, 2010, San Diego/CA, USA

A. Suratanee, I. Wörz, A. Kumar, P. Matula, L. Kaderali, K. Rohr, R. Bartenschlager, R. Eils, and R. König, ``Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening images'', European Conference on Computational Biology (ECCB'10), Ghent, Belgium, 26-29 Sept. 2010

S. Wörz, P. Sander, M. Pfannmöller, R.J. Rieker, S. Joos, G. Mechtersheimer, P. Boukamp, P. Lichter, and K. Rohr, ``Model-Based Segmentation and Colocalization Quantification in 3D Microscopy Images'', Proc. Workshop Bildverarbeitung für die Medizin 2010 - Algorithmen, Systeme, Anwendungen -, Heidelberg, Germany, 14.-16. March 2010, Informatik aktuell, T.M. Deserno, H. Handels, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2010, 86-91

N. Harder, F. Mora-Bermúdez, W.J. Godinez, A. Wünsche, J. Ellenberg, R. Eils, and K. Rohr, ``Automatic Analysis of Dividing Cells in Live Cell Movies to Detect Mitotic Delays and Correlate Phenotypes in Time'', Proc. Workshop Bildverarbeitung für die Medizin 2010 - Algorithmen, Systeme, Anwendungen -, Heidelberg, Germany, 14.-16. March 2010, Informatik aktuell, T.M. Deserno, H. Handels, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2010, 81-85

2009

W.J. Godinez, M. Lampe, S. Wörz, B. Müller, R. Eils, and K. Rohr, ``Deterministic and Probabilistic Approaches for Tracking Virus Particles in Time-lapse Fluorescence Microscopy Image Sequences'', Medical Image Analysis 13 (2009) 325-342
N. Harder, F. Mora-Bermúdez, W.J. Godinez, A. Wünsche, R. Eils, J. Ellenberg, and K. Rohr, ``Automatic Analysis of Dividing Cells in Live Cell Movies to Detect Mitotic Delays and Correlate Phenotypes in Time'', Genome Research 19:11 (2009) 2113-2124
P. Matula, A. Kumar, I. Wörz, H. Erfle, R. Bartenschlager, R. Eils, and K. Rohr, ``Single-cell-based image analysis of high-throughput cell array screens for quantification of viral infection'', Cytometry: Part A 75A:4 (2009) 309-318
M. Gipp, G. Marcus, N. Harder, A. Suratanee, K. Rohr, R. König, and R. Männer, ``Haralick's Texture Features Computed by GPUs for Biological Applications'', IAENG International Journal of Computer Science 36:1 (2009)
S. Wörz, M.-L. Winz, and K. Rohr, ``Geometric Alignment of 2D Gel Electrophoresis Images'', Methods of Information in Medicine 48:4 (2009) 320-323
S. Ivanchenko, W.J. Godinez, M. Lampe, H.-G. Kräusslich, R. Eils, K. Rohr, C. Bräuchle, B. Müller, and D.C. Lamb, ``Dynamics of HIV-1 Assembly and Release'', PLoS Pathogens 5:11 (2009) 1-12
P. Koch, M. Lampe, W.J. Godinez, B. Müller, K. Rohr, H.-G. Kräusslich, and M. Lehmann, ``Visualizing fusion of pseudotyped HIV-1 particles in real time by live cell microscopy'', Retrovirology 6:84 (2009) 1-14
S. Wörz, W.J. Godinez, and K. Rohr, ``Segmentation of 3D tubular structures based on 3D intensity models and particle filter tracking'', Medical Imaging 2009 - Image Processing (MI'09), Proc. SPIE Internat. Symposium, Febr. 7-12, 2009, Lake Buena Vista, Florida, USA
I.-H. Kim, R. Eils, and K. Rohr, ``Nonrigid alignment of multi-channel fluorescence microscopy images of live cells for improved classification of subcellular particle motion'', Medical Imaging 2009 - Biomedical Applications in Molecular, Structural, and Functional Imaging (MI'09), Proc. SPIE Internat. Symposium, Febr. 7-12, 2009, Lake Buena Vista, Florida, USA
T. Lange, S. Wörz, K. Rohr, and P.M. Schlag, ``Experimental comparison of landmark-based methods for 3D elastic registration of pre- and postoperative liver CT data'', Medical Imaging 2009 - Visualization, Image-guided Procedures and Modeling (MI'09), Proc. SPIE Internat. Symposium, Febr. 7-12, 2009, Lake Buena Vista, Florida, USA
W.J. Godinez, M. Lampe, S. Wörz, R. Eils, B. Müller, and K. Rohr, ``Identifying Fusion Events In Fluorescence Microscopy Images'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'09), Boston, Massachusetts, USA, June 28 - July 1, 2009, 1170-1173
A. Biesdorf, S. Wörz, H. von Tengg-Kobligk, and K. Rohr, ``Automatic Detection of Supraaortic Branches and Model-Based Segmentation of the Aortic Arch from 3D CTA Images'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'09), Boston, Massachusetts, USA, June 28 - July 1, 2009, 486-489
W.J. Godinez, M. Lampe, S. Wörz, B. Müller, R. Eils, and K. Rohr, ``Performance Evaluation of Approaches for Tracking Multiple Virus Particles in Fluorescence Microscopy Image Sequences'', Fourth International Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB'2009), 3./4. Sept. 2009, NIH Campus, Bethesda, MD/USA, J. Rittscher et al. (Eds.), 2009
A. Biesdorf, S. Wörz, H.-J. Kaiser, C. Stippich, and K. Rohr, ``Hybrid Spline-Based Multimodal Registration using Local Measures for Joint Entropy and Mutual Information'', Proc. 12th Internat. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'2009), London, UK, 20-24 Sept. 2009, Lecture Notes in Computer Science 4190, Springer-Verlag Berlin Heidelberg 2009, 607-615
A. Biesdorf, S. Wörz, H.-J. Kaiser, and K. Rohr, ``Hybrid Spline-Based Multimodal Registration Using a Local Measure for Mutual Information'', Proc. Workshop Bildverarbeitung für die Medizin 2009 - Algorithmen, Systeme, Anwendungen -, Heidelberg, Germany, 22.-25. March 2009, Informatik aktuell, H.-P. Meinzer, T.M. Deserno, H. Handels, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2009, 127-131
W.J. Godinez, M. Lampe, S. Wörz, B. Müller, R. Eils, and K. Rohr, ``Evaluation of Approaches for Tracking Virus Particles in Fluorescence Microscopy Images'', Proc. Workshop Bildverarbeitung für die Medizin 2009 - Algorithmen, Systeme, Anwendungen -, Heidelberg, Germany, 22.-25. March 2009, Informatik aktuell, H.-P. Meinzer, T.M. Deserno, H. Handels, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2009, 207-211
S. Wörz, W.J. Godinez, and K. Rohr, ``Probabilistic Tracking and Model-Based Segmentation of 3D Tubular Structures'', Proc. Workshop Bildverarbeitung für die Medizin 2009 - Algorithmen, Systeme, Anwendungen -, Heidelberg, Germany, 22.-25. March 2009, Informatik aktuell, H.-P. Meinzer, T.M. Deserno, H. Handels, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2009, 41-45
S. Wörz, H. von Tengg-Kobligk, V. Henninger, D. Böckler, H.-U. Kauczor, and K. Rohr, ``3D Segmentation and Quantification of the Aortic Arch for Endovascular Aortic Repair'', Proc. Workshop Bildverarbeitung für die Medizin 2009 - Algorithmen, Systeme, Anwendungen -, Heidelberg, Germany, 22.-25. March 2009, Informatik aktuell, H.-P. Meinzer, T.M. Deserno, H. Handels, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2009, 162-166
T. Lange, S. Wörz, K. Rohr, and P.M. Schlag, ``Landmark-Based 3D Elastic Registration of Pre- and Postoperative Liver CT Data: An Experimental Comparison'', Proc. Workshop Bildverarbeitung für die Medizin 2009 - Algorithmen, Systeme, Anwendungen -, Heidelberg, Germany, 22.-25. March 2009, Informatik aktuell, H.-P. Meinzer, T.M. Deserno, H. Handels, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2009, 107-111

2008

S. Wörz and K. Rohr, ``Physics-Based Elastic Registration Using Non-Radial Basis Functions and Including Landmark Localization Uncertainties'', Computer Vision and Image Understanding 111 (2008) 263-274
N. Harder, R. Eils, and K. Rohr, ``Automated classification of mitotic phenotypes of human cells using fluorescent proteins'', Methods in Cell Biology 85 (2008) 539-554
S. Heinzer, S. Wörz, C. Kalla, K. Rohr, and M. Weiss, ``A model for the self-organization of exit sites in the endoplasmatic reticulum'', J. of Cell Science 121:1 (2008) 55-64
S. Wörz and K. Rohr, ``Cramér-Rao Bounds for Estimating the Position and Width of 3D Tubular Structures and Analysis of Thin Structures with Application to Vascular Images'', J. of Mathematical Imaging and Vision 30:2 (2008) 167-180
S. Yang, D. Köhler, K. Teller, T. Cremer, P. Le Baccon, E. Heard, R. Eils, and K. Rohr, ``Non-rigid registration of 3D multi-channel microscopy images of cell nuclei'', IEEE Trans. on Image Processing 17:4 (April 2008) 493-499
E. Gladilin, S. Götze, J. Mateos-Langerak, R. van Driel, R. Eils, and K. Rohr, ``Shape normalization of 3D cell nuclei using elastic spherical mapping'', J. of Microscopy 231:1 (2008) 105-114
L. Maier-Hein, S.A. Müller, F. Pianka, S. Wörz, A. Seitel,B.P. Müller-Stich, K. Rohr, B.M. Schmied, H.-P. Meinzer, I. Wolf, ``Respiratory motion compensation for CT-guided interventions in the liver'', Computer Aided Surgery 13:3 (2008) 125-138
S. Yang, D. Illner, K. Teller, I. Solovei, R. van Driel, B. Joffe, T. Cremer, R. Eils, and K. Rohr, ``Structural Analysis of Interphase X-Chromatin Based on Statistical Shape Theory'', Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1783 (2008) 2089-2099
N. Harder, F. Mora-Bermúdez, W.J. Godinez, J. Ellenberg, R. Eils, and K. Rohr, ``Automated analysis of mitotic cell nuclei in 3D fluorescence microscopy image sequences'', Workshop on Bio-Image Informatics: Biological Imaging, Computer Vision and Data Mining, 2008, Center for Bio-Image Informatics, UCSB, Santa Barbara/CA, USA, Jan. 17-18, 2008, B.S. Manjunath, G. Danuser, and A. Carpenter (Eds.)
S. Wörz and K. Rohr, ``Hybrid physics-based elastic image registration using approximating splines'', Medical Imaging 2008 - Image Processing (MI'08), Proc. SPIE Internat. Symposium, Febr. 16-21, 2008, San Diego/CA, USA
S. Wörz, S. Heinzer, M. Weiss, and K. Rohr, ``Model-based segmentation and quantification of subcellular structures in 2D and 3D fluorescent microscopy images'', Medical Imaging 2008 - Physiology, Function, and Structure from Medical Images (MI'08), Proc. SPIE Internat. Symposium, Febr. 16-21, 2008, San Diego/CA, USA
S. Wörz, H. von Tengg-Kobligk, V. Henninger, D. Böckler, H.-U. Kauczor, and K. Rohr, ``Quantification of the aortic arch morphology in 3D CTA images for endovascular aortic repair (EVAR)'', Medical Imaging 2008 - Visualization, Image-guided Procedures, and Modeling (MI'08), Proc. SPIE Internat. Symposium, Febr. 16-21, 2008, San Diego/CA, USA
P. Matula, A. Kumar, I. Wörz, N. Harder, H. Erfle, R. Bartenschlager, R. Eils, and K. Rohr, ``Automated Analysis of siRNA Screens of Cells Infected by Hepatitis C and Dengue Viruses Based on Immunofluorescence Microscopy Images'', Medical Imaging 2008 - Physiology, Function, and Structure from Medical Images (MI'08), Proc. SPIE Internat. Symposium, Febr. 16-21, 2008, San Diego/CA, USA
W.J. Godinez, M. Lampe, S. Wörz, B. Müller, R. Eils, and K. Rohr, ``Probabilistic Tracking of Virus Particles in Fluorescence Microscopy Images'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, May 14-17, 2008, 272-275
S. Wörz, M.-L. Winz, and K. Rohr, ``Geometric Alignment of 2D Gel Electrophoresis Images Using Physics-Based Elastic Registration'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, May 14-17, 2008
F. Rengier, S. Wörz, , W.J. Godinez, D. Böckler, K. Rohr, H.-U. Kauczor, and H. von Tengg-Kobligk, ''Quantitative geometric characterization of supra aortic arteries with radiological in vivo imaging for branched endovascular aortic repair'', Proc. Computer Assisted Radiology and Surgery (CARS'08),Barcelona, Spain, June 25-28, 2008,Int. Journal of Computer Assisted Radiology and Surgery 3, Suppl 1 (2008) 138-139
M. Gipp, G. Marcus, N. Harder, A. Suratanee, K. Rohr, R. König, and R. Männer, ``Accelerating the computation of Haralick's Texture Features using Graphics Processing Units (GPUs)'', Proc. World Congress on Engineering 2008 (WCE'08), The 2008 Internat. Conf. of Parallel and Distributed Computing (ICPDC'08), London, UK, July 2-4, 2008, Newswood Limited, International Association of Engineers 2008, 587-593
P. Matula, A. Kumar, I. Wörz, H. Erfle, R. Bartenschlager, R. Eils, and K. Rohr, ''Evaluation of siRNA Screens of Cells Infected by Hepatitis C and Dengue Viruses based on Immunofluorescence Microscopy'', Third International Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB'2008), in conjunction with MICCAI'08, New York University, New York, NY/USA, 6. Sept. 2008 J. Rittscher, S. Lockett, K. Rohr, T. Tasdizen, and S. Megason (Eds.), New York 2008
S. Wörz, M.-L. Winz, and K. Rohr, ``Geometric Alignment of 2D Gel Electrophoresis Images'', Proc. Workshop Bildverarbeitung für die Medizin 2008 - Algorithmen, Systeme, Anwendungen -, Berlin/Germany, 6.-8. April 2008, Informatik aktuell, T. Tolxdorff, J. Braun, T.M. Deserno, H. Handels, A. Horsch, and H.-P. Meinzer (Eds.), Springer-Verlag Berlin Heidelberg 2008, 97-101
P. Matula, A. Kumar, I. Wörz, N. Harder, H. Erfle, R. Bartenschlager, R. Eils, and K. Rohr, ``Automated Analysis of siRNA Screens of Virus Infected Cells Based on Immunofluorescence Microscopy Images'', Proc. Workshop Bildverarbeitung für die Medizin 2008 - Algorithmen, Systeme, Anwendungen -, Berlin/Germany, 6.-8. April 2008, Informatik aktuell, T. Tolxdorff, J. Braun, T.M. Deserno, H. Handels, A. Horsch, and H.-P. Meinzer (Eds.), Springer-Verlag Berlin Heidelberg 2008, 453-457
W.J. Godinez, M. Lampe, S. Wörz, B. Müller, R. Eils, and K. Rohr, ``Probabilistic Tracking of Virus Particles in Fluorescence Microscopy Image Sequences'', Proc. Workshop Bildverarbeitung für die Medizin 2008 - Algorithmen, Systeme, Anwendungen -, Berlin/Germany, 6.-8. April 2008, Informatik aktuell, T. Tolxdorff, J. Braun, T.M. Deserno, H. Handels, A. Horsch, and H.-P. Meinzer (Eds.), Springer-Verlag Berlin Heidelberg 2008, 448-452
N. Harder, R. Eils, and K. Rohr, ``Automated classification of mitotic phenotypes of human cells using fluorescent proteins'', Chapter 23 in Fluorescent Proteins, K.F. Sullivan (Ed.), Academic Press 2008, 539-554

2007

K. Rohr, ``Theoretical Limits of Localizing 3D Landmarks and Features'', IEEE Trans. on Biomedical Engineering 54:9 (2007) 1613-1620
S. Wörz and K. Rohr, ``Segmentation and Quantification of Human Vessels Using a 3-D Cylindrical Intensity Model'', IEEE Trans. on Image Processing 16:8 (2007) 1994-2004
A. Järve, J. Müller, I.-H. Kim, K. Rohr, C. MacLean, G. Fricker, U. Massing, F. Eberle, A. Dalpke, R. Fischer, M. Trendelenburg, and M. Helm, ``Surveillance of siRNA integrity by FRET imaging'', Nucleic Acids Research 35:18 (2007) 1-13
I.-H. Kim, J. Nagel, S. Otten, B. Knerr, R. Eils, K. Rohr, and S. Dietzel, ``Quantitative comparison of DNA detection by GFP-lac repressor tagging, fluorescence in situ hybridization and immunostaining'', BMC Biotechnology 7:92 (2007) 1-9
S. Wörz and K. Rohr, ``3D adaptive model-based segmentation of human vessels'', Medical Imaging 2007 - Physiology, Function, and Structure from Medical Images (MI'07), Proc. SPIE Internat. Symposium, Febr. 17-22, 2007, San Diego/CA, USA
S. Wörz, C. Kappel, R. Eils, and K. Rohr, ``Model-based segmentation and quantification of fluorescent bacteria in 3D microscopy live cell images'', Medical Imaging 2007 - Image Processing (MI'07), Proc. SPIE Internat. Symposium, Febr. 17-22, 2007, San Diego/CA, USA
S. Wörz and K. Rohr, ``Spline-based elastic image registration using solutions of the Navier equation'', Medical Imaging 2007 - Image Processing (MI'07), Proc. SPIE Internat. Symposium, Febr. 17-22, 2007, San Diego/CA, USA
I.-H. Kim, W.J. Godinez, N. Harder, F. Mora-Bermúdez, J. Ellenberg, R. Eils, and K. Rohr, ``Compensation of global movement for improved tracking of cells in time-lapse confocal microscopy image sequences'', Medical Imaging 2007 - Image Processing (MI'07), Proc. SPIE Internat. Symposium, Febr. 17-22, 2007, San Diego/CA, USA
W.J. Godinez, M. Lampe, S. Wörz, B. Müller, R. Eils, and K. Rohr, ``Tracking of Virus Particles in Time-lapse Fluorescence Microscopy Image Sequences'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07), Arlington/VA, USA, April 12-15, 2007, J. Fessler and T. Denney (Eds.), 256-259
N. Harder, F. Mora-Bermúdez, W.J. Godinez, J. Ellenberg, R. Eils, and K. Rohr, ``Determination of Mitotic Delays in 3D Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07), Arlington/VA, USA, April 12-15, 2007, J. Fessler and T. Denney (Eds.), 1044-1047
I.-H. Kim, S. Yang, P. Le Baccon, E. Heard, Y.-C. Chen, D. Spector, C. Kappel, R. Eils, and K. Rohr, ``Non-Rigid Temporal Registration of 2D and 3D Multi-Channel Microscopy Image Sequences of Human Cells'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'07), Arlington/VA, USA, April 12-15, 2007, J. Fessler and T. Denney (Eds.), 1328-1331
E. Gladilin, A. Micoulet, B. Hosseini, K. Rohr, J. Spatz, and R. Eils, ``3D finite element analysis of uniaxial cell stretching: from image to insight'', Physical Biology 4 (2007) 104-113
E. Gladilin, S. Götze, J. Mateos-Langerak, R. van Driel, K. Rohr, and R. Eils, ``Stochastical analysis of finite point sampling of 3D chromatin fiber in interphase cell nuclei'', Proc. 1st Int. Conference on Bioinformatics Research and Development (BIRD'07), TU Berlin, Germany, March 12-14, 2007, Lecture Notes in Computer Science, Lecture Notes in Bioinformatics 4414, S. Hochreiter and R. Wagner (Eds.), Springer-Verlag Berlin Heidelberg 2007, 104-118
E. Gladilin, S. Götze, J. Mateos-Langerak, R. van Driel, K. Rohr, and R. Eils, ``Geometrical probability approach for analysis of 3D chromatin structure in interphase cell nucleii'', Proc. IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology (CIBCB'07), 1-5 April 2007, Honolulu, Hawaii, 127-134
S. Yang, S. Götze, J. Mateos-Langerak, R. van Driel, R. Eils, and K. Rohr, ``Variability Analysis of the Large-Scale Structure of Chromatin Fiber Based on Statistical Shape Theory'', Advances in Mass Data Analysis of Signals and Images in Medicine, Biotechnology, and Chemistry, Proc. Internat. Conf., MDA'07, July 18, 2007, Leipzig/Germany, Lecture Notes in Computer Science 4826, P. Perner and O. Salvetti (Eds.), Springer Berlin Heidelberg 2007, 37-46
K. Rohr, N. Harder, and R. Eils, ``Automated Analysis of Spatio-Temporal Cell Microscopy Images: Classification, Tracking, and Registration'', Proceedings 6th International Congress on Industrial and Applied Mathematics (ICIAM'07), European Society for Mathematical and Theoretical Biology (ESMTB) Meeting, ETH Zürich, University of Zürich, Switzerland, 2007
E. Gladilin, K. Rohr, and R. Eils, ``On Validation of Non-physical Techniques for Elastic Image Registration'', Proc. Workshop Bildverarbeitung für die Medizin 2007 - Algorithmen, Systeme, Anwendungen -, München/Germany, 25.-27. März 2007, Informatik aktuell, A. Horsch, T.M. Deserno, H. Handels, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2007, 111-115
N. Harder, F. Mora-Bermúdez, W.J. Godinez, J. Ellenberg, R. Eils, and K. Rohr, ``Determination of mitotic delays in 3D fluorescence microscopy images of human cells using an error-correcting finite state machine'', Proc. Workshop Bildverarbeitung für die Medizin 2007 - Algorithmen, Systeme, Anwendungen -, München/Germany, 25.-27. März 2007, Informatik aktuell, A. Horsch, T.M. Deserno, H. Handels, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2007, 242-246
I.-H. Kim, S. Yang, P. Le Baccon, E. Heard, C. Kappel, R. Eils, and K. Rohr, ``Non-rigid Temporal Alignment of 2D and 3D Multi-channel Microscopy Image Sequences of Human Cells'', Proc. Workshop Bildverarbeitung für die Medizin 2007 - Algorithmen, Systeme, Anwendungen -, München/Germany, 25.-27. März 2007, Informatik aktuell, A. Horsch, T.M. Deserno, H. Handels, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2007, 16-20
S. Wörz and K. Rohr, ``Hybrid Spline-Based Elastic Image Registration Using Analytic Solutions of the Navier Equation'', Proc. Workshop Bildverarbeitung für die Medizin 2007 - Algorithmen, Systeme, Anwendungen -, München/Germany, 25.-27. März 2007, Informatik aktuell, A. Horsch, T.M. Deserno, H. Handels, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2007, 151-155
W.J. Godinez, M. Lampe, S. Wörz, B. Müller, R. Eils, and K. Rohr, ``Tracking of Virus Particles in Time-lapse Fluorescence Microscopy Image Sequences'', Proc. Workshop Bildverarbeitung für die Medizin 2007 - Algorithmen, Systeme, Anwendungen -, München/Germany, 25.-27. März 2007, Informatik aktuell, A. Horsch, T.M. Deserno, H. Handels, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2007, 6-10
S. Wörz and K. Rohr, ``Spline-Based Elastic Image Registration With Matrix-Valued Basis Functions Using Landmark and Intensity Information'', Proc. 29th DAGM Symposium Pattern Recognition (DAGM'07), Sept. 12-14, 2007, Heidelberg/Germany, Lecture Notes in Computer Science 4713, F. Hamprecht, C. Schnörr, and B. Jähne (Eds.), Springer Berlin Heidelberg 2007, 537-546
S. Yang, S. Götze, J. Mateos-Langerak, R. van Driel, R. Eils, and K. Rohr, ``Analyzing the Variability of the 3D Structure of Chromatin Fiber Using Statistical Shape Theory'', Proc. 29th DAGM Symposium Pattern Recognition (DAGM'07), Sept. 12-14, 2007, Heidelberg/Germany, Lecture Notes in Computer Science 4713, F. Hamprecht, C. Schnörr, and B. Jähne (Eds.), Springer Berlin Heidelberg 2007, 497-506
S. Wörz and K. Rohr, ``Elastic Registration of Medical Images with Physics-Based Splines using Intensity and Landmark Information'', Proc. 6. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC'07), Oct. 11-13, 2007, Karlsruhe/Germany, H. Wörn and U. Spetzger (Eds.), Pro Business Berlin 2007, 75-78

2006

S. Wörz and K. Rohr, ``Localization of Anatomical Point Landmarks in 3D Medical Images by Fitting 3D Parametric Intensity Models'', Medical Image Analysis 10:1 (2006) 41-58
V. Pekar, E. Gladilin, and K. Rohr, ``An adaptive irregular grid approach for 3-D deformable image registration'', Physics in Medicine and Biology 51 (2006) 361-377
E. Gladilin, V. Pekar, K. Rohr, and H.S. Stiehl, ``A Comparison Between BEM and FEM for Elastic Registration of Medical Images'', Image and Vision Computing 24:4 (2006) 375-379
H. Albiez, M. Cremer, C. Tiberi, L. Vecchio, L. Schermelleh, S. Dittrich, K. Küpper, B. Joffe, T. Thormeyer, J. von Hase, S. Yang, K. Rohr, H. Leonhardt, I. Solovei, C. Cremer, S. Fakan, and T. Cremer, ``Chromatin Domains and the Interchromatin Compartment Form Structurally Defined and Functionally Interacting Nuclear Networks'', Chromosome Research 14 (2006) 707-733
E. Gladilin, S. Götze, J. Mateos-Langerak, R. van Driel, R. Eils, and K. Rohr, ``Topological analysis of 3D cell nuclei using finite element template-based spherical mapping'', Medical Imaging 2006 - Physiology, Function, and Structure from Medical Images (MI'06), Proc. SPIE Internat. Symposium, Vol. 6144, Febr. 11-16, 2006, San Diego/CA, USA, A. Manduca and A.A. Amini (Eds.), 1557-1566
H. Belitz, K. Rohr, H. Müller, and G. Wagenknecht, ``First Results of an Automated Model-Based Segmentation System for Subcortical Structures in Human Brain MRI Data'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'06), Arlington/VA, USA, April 6-9, 2006, J. Kovacevic and E. Meijering (Eds.), 402-405
N. Harder, B. Neumann, M. Held, U. Liebel, H. Erfle, J. Ellenberg, R. Eils, and K. Rohr, ``Automated recognition of mitotic patterns in fluorescence microscopy images of human cells'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'06), Arlington/VA, USA, April 6-9, 2006, J. Kovacevic and E. Meijering (Eds.), 1016-1019
K. Rohr and S. Wörz, ``High-Precision Localization and Quantification of 3D Tubular Structures'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'06), Arlington/VA, USA, April 6-9, 2006, J. Kovacevic and E. Meijering (Eds.), 1160-1163
K. Rohr, E. Gladilin, W.J. Godinez, N. Harder, J.-H. Kim, S. Wörz, S. Yang, and R. Eils, ``Automated Analysis of Cell Microscopy Images: Registration, Tracking, and Classification'', Proc. 6th International ELMI Meeting and Workshop on Advanced Light Microscopy (ELMI'06), Ofir, Portugal, May 30 - June 2, 2006, 30
V. Kovalev, N. Harder, B. Neumann, M. Held, U. Liebel, H. Erfle, J. Ellenberg, R. Eils, and K. Rohr, ``Feature Selection for Evaluating Fluorescence Microscopy Images in Genome-Wide Cell Screens'', Proc. IEEE Conf. on Computer Vision and Pattern Recognition (CVPR'06), New York/NY, USA, June 17-22, 2006, C. Schmid, S. Soatto, and C. Tomasi (Eds.), IEEE Computer Society Press 2006, 276-283
K. Rohr and S. Wörz, ``Elastic Registration and Quantification of Biomedical Images'', Proc. 9th Korea-Germany Joint Workshop on Advanced Medical Image Processing, Ewha Womans University, Seoul, Korea, Sept. 21-26, 2006, 37-40
S. Wörz and K. Rohr, ``Physics-Based Elastic Image Registration Using Splines and Including Landmark Localization Uncertainties'', Proc. 9th Internat. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'2006), Copenhagen, Denmark, 1.-6. Oct. 2006, Lecture Notes in Computer Science 4191, Part II, R. Larsen, M. Nielsen, and J. Sporring (Eds.), Springer-Verlag Berlin Heidelberg 2006, 678-685
S. Wörz and K. Rohr, ``Limits on Estimating the Width of Thin Tubular Structures in 3D Images'', Proc. 9th Internat. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'2006), Copenhagen, Denmark, 1.-6. Oct. 2006, Lecture Notes in Computer Science 4190, Part I, R. Larsen, M. Nielsen, and J. Sporring (Eds.), Springer-Verlag Berlin Heidelberg 2006, 215-222
S. Yang, D. Köhler, K. Teller, T. Cremer, P. Le Baccon, E. Heard, R. Eils, and K. Rohr, ``Non-rigid registration of 3D multi-channel microscopy images of cell nuclei'', Proc. 9th Internat. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'2006), Copenhagen, Denmark, 1.-6. Oct. 2006, Lecture Notes in Computer Science 4190, Part I, R. Larsen, M. Nielsen, and J. Sporring (Eds.), Springer-Verlag Berlin Heidelberg 2006, 907-914
N. Harder, F. Mora-Bermúdez, W.J. Godinez, J. Ellenberg, R. Eils, and K. Rohr, ``Automated analysis of the mitotic phases of human cells in 3D fluorescence microscopy image sequences'', Proc. 9th Internat. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'2006), Copenhagen, Denmark, 1.-6. Oct. 2006, Lecture Notes in Computer Science 4190, Part I, R. Larsen, M. Nielsen, and J. Sporring (Eds.), Springer-Verlag Berlin Heidelberg 2006, 840-848
N. Harder, F. Mora-Bermúdez, W.J. Godinez, J. Ellenberg, R. Eils, and K. Rohr, ``Automated analysis of the mitotic phases of human cells in 3D fluorescence microscopy image sequences'', Proc. MICCAI'2006 Workshop Microscopic Image Analysis with Applications in Biology (MIAAB'2006), Copenhagen, Denmark, 5. Oct. 2006, D.N. Metaxas, R.T Whitaker, J. Rittscher, and T.B. Sebastian (Eds.), Copenhagen 2006
E. Gladilin, R. Eils, and K. Rohr, ``3D Formnormalisierung von Zellkernen mit Hilfe einer elastischen Kugelabbildung'', Proc. Workshop Bildverarbeitung für die Medizin 2006 - Algorithmen, Systeme, Anwendungen -, Hamburg/Germany, 19.-21. März 2006, Informatik aktuell, H. Handels, J. Ehrhardt, A. Horsch, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2006, 384-388
N. Harder, B. Neumann, M. Held, U. Liebel, H. Erfle, J. Ellenberg, R. Eils, and K. Rohr, ``Automated analysis of mitotic phenotypes in fluorescence microscopy images of human cells'', Proc. Workshop Bildverarbeitung für die Medizin 2006 - Algorithmen, Systeme, Anwendungen -, Hamburg/Germany, 19.-21. März 2006, Informatik aktuell, H. Handels, J. Ehrhardt, A. Horsch, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2006, 374-378
S. Yang, D. Köhler, K. Teller, T. Cremer, R. Eils, and K. Rohr, ``Non-Rigid Registration of 3D Microscopy Images for the Normalization of Different Cell Nuclei'', Proc. Workshop Bildverarbeitung für die Medizin 2006 - Algorithmen, Systeme, Anwendungen -, Hamburg/Germany, 19.-21. März 2006, Informatik aktuell, H. Handels, J. Ehrhardt, A. Horsch, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2006, 364-368
S. Wörz and K. Rohr, ``New Approximating Gaussian Elastic Body Splines for Landmark-Based Registration of 2D and 3D Medical Images'', Proc. Workshop Bildverarbeitung für die Medizin 2006 - Algorithmen, Systeme, Anwendungen -, Hamburg/Germany, 19.-21. März 2006, Informatik aktuell, H. Handels, J. Ehrhardt, A. Horsch, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2006, 206-210
S. Wörz and K. Rohr, ``Limits on Estimating the Width of Thin Vessels in 3D Medical Images'', Proc. Workshop Bildverarbeitung für die Medizin 2006 - Algorithmen, Systeme, Anwendungen -, Hamburg/Germany, 19.-21. März 2006, Informatik aktuell, H. Handels, J. Ehrhardt, A. Horsch, H.-P. Meinzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2006, 186-190

2005

J. Kohlrausch, K. Rohr, and H.S. Stiehl, ``A New Class of Elastic Body Splines for Nonrigid Registration of Medical Images'', J. of Mathematical Imaging and Vision 23:3 (2005) 253-280
S. Frantz, K. Rohr, and H.S. Stiehl, ``Development and Validation of a Multi-Step Approach to Improved Detection of 3D Point Landmarks in Tomographic Images'', Image and Vision Computing 23:11 (2005) 956-971
K. Rohr, ``Fundamental Limits in 3D Landmark Localization'', Proc. 19th Internat. Conf. on Information Processing in Medical Imaging (IPMI'05), Glenwood Springs, CO, USA, July 11-15, 2005, In Lecture Notes in Computer Science 3565, G.E. Christensen and M. Sonka (Eds.), Springer-Verlag Berlin Heidelberg 2005, 286-298
J. Castellanos, K. Rohr, T. Tolxdorff, and G. Wagenknecht, ``Automatic Parameter Optimization for De-noising MR Data'', Proc. 8th Internat. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'2005), Palm Springs, California, USA, Oct. 26-30, 2005, Lecture Notes in Computer Science 3750, Part II, J.S. Duncan and G. Gerig (Eds.), Springer-Verlag Berlin Heidelberg 2005, 320-327
H. Belitz, K. Rohr, H. Müller, and G. Wagenknecht, ``Automatische, modellbasierte Segmentierung subkortikaler Areale aus MRT-Daten des menschlichen Gehirns: Erste Ergebnisse'', Proc. Workshop Bildverarbeitung für die Medizin 2005 - Algorithmen, Systeme, Anwendungen -, Heidelberg/Germany, 13.-15. März 2005, Informatik aktuell, H.-P. Meinzer, H. Handels, A. Horsch, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2005, 118-122
J. Castellanos, K. Rohr, T. Tolxdorff, and G. Wagenknecht, ``De-noising MRI Data - An Iterative Method for Filter Parameter Optimization'', Proc. Workshop Bildverarbeitung für die Medizin 2005 - Algorithmen, Systeme, Anwendungen -, Heidelberg/Germany, 13.-15. März 2005, Informatik aktuell, H.-P. Meinzer, H. Handels, A. Horsch, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2005, 40-44
S. Wörz and K. Rohr, ``Adaptive Model-Based Segmentation of Human Vessels from 3D MRA and CTA Data'', Proc. Workshop Bildverarbeitung für die Medizin 2005 - Algorithmen, Systeme, Anwendungen -, Heidelberg/Germany, 13.-15. März 2005, Informatik aktuell, H.-P. Meinzer, H. Handels, A. Horsch, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 2005, 103-107

2004

K. Rohr, P. Cathier, and S. Wörz, ``Elastic Registration of Electrophoresis Images Using Intensity Information and Point Landmarks'', Pattern Recognition 37:5 (May 2004) 1035-1048
K. Rohr, P. Cathier, and S. Wörz, ``Elastic Registration of Gel Electrophoresis Images Based on Landmarks and Intensities'', Proc. IEEE Internat. Symposium on Biomedical Imaging: From Nano to Macro (ISBI'04), Arlington/VA, USA, April 15-18, 2004, R.M. Leahy and C. Roux (Eds.), 1451-1454
S. Wörz and K. Rohr, ``A New 3D Parametric Intensity Model for Accurate Segmentation and Quantification of Human Vessels'', Proc. 7th Internat. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'2004), Rennes, Saint-Malo, France, 26.-29. Sept. 2004, Lecture Notes in Computer Science 3216, Part I, C. Barillot, D.R. Haynor, and P. Hellier (Eds.), Springer-Verlag Berlin Heidelberg 2004, 491-499
S. Wörz and K. Rohr, ``3D Parametric Intensity Models for Accurate Segmentation and Quantification of Human Arteries'', Proc. Workshop Bildverarbeitung für die Medizin 2004 - Algorithmen, Systeme, Anwendungen -, Berlin/Germany, 29.-30. März 2004, Informatik aktuell, T. Tolxdorff, J. Braun, H. Handels, A. Horsch, and H.-P. Meinzer (Eds.), Springer-Verlag Berlin Heidelberg 2004, 85-89
S. Wörz and K. Rohr, ``Automatic ROI Size Selection and Parameter Initialization for Model-Based Localization of 3D Anatomical Point Landmarks'', Proc. Workshop Bildverarbeitung für die Medizin 2004 - Algorithmen, Systeme, Anwendungen -, Berlin/Germany, 29.-30. März 2004, Informatik aktuell, T. Tolxdorff, J. Braun, H. Handels, A. Horsch, and H.-P. Meinzer (Eds.), Springer-Verlag Berlin Heidelberg 2004, 333-337
S. Wörz and K. Rohr, ``3D Segmentation and Quantification of Human Vessels based on a New 3D Parametric Intensity Model'', Proc. 26th DAGM Symposium Pattern Recognition (DAGM'04), Aug. 30 - Sept. 1, 2004, Tübingen/Germany, Lecture Notes in Computer Science 3175, C.E. Rasmussen, H.H. Bülthoff, M.A. Giese, and B. Schölkopf (Eds.), Springer Berlin Heidelberg 2004, 111-119

2003

K. Rohr and C. Drewniok, ``Model-based landmark extraction and correspondence finding for aerial image registration'', Chapter 5 in Video Registration, M. Shah and R. Kumar (Eds.), Video Computing Series, Vol. 5, Kluwer Academic Publishers, Boston Dordrecht London 2003, 106-129
K. Rohr, M. Fornefett, and H.S. Stiehl, ``Spline-Based Elastic Image Registration: Integration of Landmark Errors and Orientation Attributes'', Computer Vision and Image Understanding 90:2 (May 2003) 153-168
I. Cloete and K. Rohr, ``Knowledge-Based Neurocomputing in Medicine'', Special Issue on Knowledge-Based Neurocomputing in Medicine, Artificial Intelligence in Medicine 28:2 (June 2003) 117-119
T. Behrens, K. Rohr, and H.S. Stiehl, ``Robust Segmentation of Tubular Structures in 3D Medical Images by Parametric Object Detection and Tracking'' Special issue on ``3D Image Analysis and Modeling'', IEEE Trans. on Systems, Man, and Cybernetics, Part B: Cybernetics, 33:4 (Aug. 2003) 554-561
K. Rohr, ``Spline-Based Elastic Image Registration'', Proceedings in Applied Mathematics and Mechanics (PAMM) 3:1 (Dec. 2003) 36-39
S. Wörz and K. Rohr, ``Localization of Anatomical Point Landmarks in 3D Medical Images by Fitting 3D Parametric Intensity Models'', Proc. 18th Internat. Conf. on Information Processing in Medical Imaging (IPMI'03), Ambleside, UK, July 20-25, 2003, In Lecture Notes in Computer Science 2732, C. Taylor and J.A. Noble (Eds.), Springer-Verlag Berlin Heidelberg 2003, 76-88
S. Wörz and K. Rohr, ``Localization of Anatomical Point Landmarks in 3D Medical Images by Fitting 3D Parametric Intensity Models'', Proc. Workshop Bildverarbeitung für die Medizin 2003 - Algorithmen, Systeme, Anwendungen -, Erlangen/Germany, 9.-11. März 2003, Informatik aktuell, T. Wittenberg, P. Hastreiter, U. Hoppe, H. Handels, A. Horsch, and H.-P. Meinzer (Eds.), Springer-Verlag Berlin Heidelberg 2003, 6-10
R.H. Gong, S. Wörz, and K. Rohr, ``Segmentation of Coronary Arteries of the Human Heart from 3D Medical Images'', Proc. Workshop Bildverarbeitung für die Medizin 2003 - Algorithmen, Systeme, Anwendungen -, Erlangen/Germany, 9.-11. März 2003, Informatik aktuell, T. Wittenberg, P. Hastreiter, U. Hoppe, H. Handels, A. Horsch, and H.-P. Meinzer (Eds.), Springer-Verlag Berlin Heidelberg 2003, 66-70
S. Wörz and K. Rohr, ``3D Parametric Intensity Models for the Localization of Different Types of 3D Anatomical Point Landmarks in Tomographic Images'', 25th DAGM Symposium Pattern Recognition (DAGM'03), Sept. 10-12, 2003, Magdeburg/Germany, Lecture Notes in Computer Science 2781, B. Michaelis and G. Krell (Eds.), Springer Berlin Heidelberg 2003, 220-227

2002

A. Hagemann, K. Rohr, and H.S. Stiehl, ``Coupling of fluid and elastic models for biomechanical simulations of brain deformations using FEM'', Medical Image Analysis 6:4 (2002) 375-388
T. Hartkens, K. Rohr, and H.S. Stiehl, ``Evaluation of 3D Operators for the Detection of Anatomical Point Landmarks in MR and CT Images'', Computer Vision and Image Understanding 86:2 (2002) 118-136
M. Alker, S. Frantz, K. Rohr, and H.S. Stiehl, ``Hybrid Optimization for 3D Landmark Extraction: Genetic Algorithms and Conjugate Gradient Method'', Proc. Workshop Bildverarbeitung für die Medizin 2002 - Algorithmen, Systeme, Anwendungen -, Leipzig/Germany, 10.-12. März 2002, Informatik aktuell, M. Meiler, D. Saupe, F. Kruggel, H. Handels, and T. Lehmann (Eds.), Springer-Verlag Berlin Heidelberg 2002, 314-317

2001

K. Rohr, Landmark-Based Image Analysis: Using Geometric and Intensity Models, Computational Imaging and Vision Series, Vol. 21, Kluwer Academic Publishers, Dordrecht Boston London 2001
M. Fornefett, K. Rohr, and H.S. Stiehl, ``Radial Basis Functions with Compact Support for Elastic Registration of Medical Images'', Image and Vision Computing 19:1-2 (2001) 87-96
K. Rohr, H.S. Stiehl, R. Sprengel, T.M. Buzug, J. Weese, and M.H. Kuhn, ``Landmark-Based Elastic Registration Using Approximating Thin-Plate Splines'', IEEE Trans. on Medical Imaging 20:6 (June 2001) 526-534
M. Alker, S. Frantz, K. Rohr, and H.S. Stiehl, ``Improving the Robustness in Extracting 3D Point Landmarks from 3D Medical Images Using Parametric Deformable Models'', Proc. Fourth Internat. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'2001), Utrecht, The Netherlands, Oct. 14-17, 2001, Lecture Notes in Computer Science 2208, W.J. Niessen and M.A. Viergever (Eds.), Springer-Verlag Berlin Heidelberg 2001, 582-590
J. Kohlrausch, K. Rohr, and H.S. Stiehl, ``A New Class of Elastic Body Splines for Nonrigid Registration of Medical Images'', Proc. Workshop Bildverarbeitung für die Medizin 2001 - Algorithmen, Systeme, Anwendungen -, Medizinische Universität zu Lübeck, Lübeck/Germany, 4.-6. März 2001, Informatik aktuell, H. Handels, A. Horsch, T. Lehmann, and H.-P. Meinzer (Eds.), Springer-Verlag Berlin Heidelberg 2001, 164-168
S. Frantz, K. Rohr, and H.S. Stiehl, ``Using Deformable Models for the Localization of 3D Anatomical Point Landmarks in 3D Tomographic Images'', Proc. Workshop Bildverarbeitung für die Medizin 2001 - Algorithmen, Systeme, Anwendungen -, Medizinische Universität zu Lübeck, Lübeck/Germany, 4.-6. März 2001, Informatik aktuell, H. Handels, A. Horsch, T. Lehmann, and H.-P. Meinzer (Eds.), Springer-Verlag Berlin Heidelberg 2001, 197-201
T. Behrens, K. Rohr, and H.S. Stiehl, ``Segmentation of Tubular Structures in 3D Images Using a Combination of the Hough Transform and a Kalman Filter'', 23rd DAGM Symposium Pattern Recognition, Sept. 12.-14., 2001, Munich/Germany, Lecture Notes in Computer Science 2191, B. Radig and S. Florczyk (Eds.), Springer Berlin Heidelberg 2001, 406-413
M. Alker, S. Frantz, K. Rohr, and H.S. Stiehl, ``Improving the Robustness in Extracting 3D Point Landmarks Based on Deformable Models'', 23rd DAGM Symposium Pattern Recognition (DAGM'01), Sept. 12.-14., 2001, Munich/Germany, Lecture Notes in Computer Science 2191, B. Radig and S. Florczyk (Eds.), Springer Berlin Heidelberg 2001, 108-115
T. Behrens, K. Rohr, and H.S. Stiehl, ``Using an Extended Hough Transform Combined with a Kalman Filter to Segment Tubular Structures in 3D Medical Images'', Proc. 6th Internat. Workshop Vision, Modeling, and Visualization 2001, Nov. 21-23, 2001, Stuttgart/Germany, T. Ertl, B. Girod, G. Greiner, H. Niemann, and H.-P. Seidel (Eds.), IOS Press/infix 2001, 491-498

2000

K. Rohr, H.S. Stiehl, S. Frantz, and T. Hartkens, ``Performance Characterization of Landmark Operators'', in Performance Characterization in Computer Vision, R. Klette, H.S. Stiehl, M.A. Viergever, and K.L. Vincken (Eds.), Computational Imaging and Vision Series, Vol. 17, Kluwer Academic Publishers, Dordrecht Boston London 2000, 285-297
K. Rohr, ``Elastic Registration of Multimodal Medical Images: A Survey'', KI - Künstliche Intelligenz 3/00 (Juli 2000) 11-17
K. Rohr, H.S. Stiehl, M. Fornefett, S. Frantz, and A. Hagemann, ``Project IMAGINE: Landmark-Based Elastic Registration and Biomechanical Brain Modelling'', KI - Künstliche Intelligenz 3/00 (Juli 2000) 37-39
A. Hagemann, K. Rohr, and H.S. Stiehl, ``Biomechanically based simulation of brain deformations for intraoperative image correction: coupling of elastic and fluid models'', Medical Imaging 2000 - Image Processing (MI'2000), Proc. SPIE Internat. Symposium, Vol. 3979, Part One, Febr. 14-17, 2000, San Diego/CA, K.M. Hanson (Ed.), 658-667
S. Frantz, K. Rohr, and H.S. Stiehl, ``Localization Of 3D Anatomical Point Landmarks In 3D Tomographic Images Using Deformable Models'', Proc. Third Internat. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'2000), Pittsburgh, Pennsylvania/USA, Oct. 11-14, 2000, Lecture Notes in Computer Science 1935, S.L Delp, A.M. DiGioia, and B. Jaramaz (Eds.), Springer-Verlag Berlin Heidelberg 2000, 492-501
M. Fornefett, K. Rohr, and H.S. Stiehl, ``Elastic Medical Image Registration Using Surface Landmarks With Automatic Finding of Correspondences'', Proc. Workshop Bildverarbeitung für die Medizin 2000 - Algorithmen, Systeme, Anwendungen -, München, Germany, 12.-14. März 2000, Informatik aktuell, A. Horsch and T. Lehmann (Eds.), Springer-Verlag Berlin Heidelberg 2000, 48-52
S. Frantz, K. Rohr, and H.S. Stiehl, ``A New Approach to the Localization of 3D Anatomical Point Landmarks in Medical Images Based on Deformable Models'', 22. DAGM-Symposium Mustererkennung, 13.-15. Sept. 2000, Kiel/Germany, Informatik aktuell, G. Sommer, N. Krüger, and Ch. Perwass (Eds.), Springer-Verlag Berlin Heidelberg 2000, 452-459

1999

K. Rohr, H.S. Stiehl, M. Fornefett, S. Frantz, and A. Hagemann, ``Landmark-Based Elastic Registration of Human Brain Images'', Navigated Brain Surgery - Interdisciplinary Views of Neuronavigation from Neurosurgeons and Computer Scientists, U. Spetzger, H.S. Stiehl, and J.M. Gilsbach (Eds.), Verlag Mainz, Aachen 1999, 137-148
A. Hagemann, K. Rohr, H.S. Stiehl, U. Spetzger, and J.M. Gilsbach, ``Elastic Registration of MR-Images Based on a Biomechanical Model of the Human Head'', Navigated Brain Surgery - Interdisciplinary Views of Neuronavigation from Neurosurgeons and Computer Scientists, U. Spetzger, H.S. Stiehl, and J.M. Gilsbach (Eds.), Verlag Mainz, Aachen 1999, 203-209
U. Spetzger, H.S. Stiehl, K. Rohr, and J.M. Gilsbach, ``Navigated Brain Surgery: An Interdisciplinary Introduction'', Navigated Brain Surgery - Interdisciplinary Views of Neuronavigation from Neurosurgeons and Computer Scientists, U. Spetzger, H.S. Stiehl, and J.M. Gilsbach (Eds.), Verlag Mainz, Aachen 1999, 5-9
K. Rohr, ``Extraction of 3D Anatomical Point Landmarks Based on Invariance Principles'', Special Issue on ``Image Registration'', Pattern Recognition 32 (1999) 3-15
W. Peckar, C. Schnörr, K. Rohr, and H.S. Stiehl, ``Parameter-Free Elastic Deformation Approach for 2-D and 3-D Registration Using Prescribed Displacements'', J. of Mathematical Imaging and Vision 10 (1999) 143-162
A. Hagemann, K. Rohr, H.S. Stiehl, U. Spetzger, and J.M. Gilsbach, ``Biomechanical Modelling of the Human Head for Physically-Based, Nonrigid Image Registration'', IEEE Trans. on Medical Imaging 18:10 (1999) 875-884
T. Hartkens, K. Rohr, and H.S. Stiehl, ``Performance of 3D differential operators for the detection of anatomical point landmarks in MR and CT images'', Medical Imaging 1999 - Image Processing (MI'99), Proc. SPIE Internat. Symposium, Vol. 3661, Part One, Febr. 22-25, 1999, San Diego/CA, K.M. Hanson (Ed.), 32-43
A. Hagemann, K. Rohr, H.S. Stiehl, U. Spetzger, and J.M. Gilsbach, ``Nonrigid matching of tomographic images based on a biomechanical model of the human head'', Medical Imaging 1999 - Image Processing (MI'99), Proc. SPIE Internat. Symposium, Vol. 3661, Part One, Febr. 22-25, 1999, San Diego/CA, K.M. Hanson (Ed.), 583-592
M. Fornefett, K. Rohr, and H.S. Stiehl, ``Elastic Registration of Medical Images Using Radial Basis Functions with Compact Support'', Proc. IEEE Conf. on Computer Vision and Pattern Recognition (CVPR'99), Fort Collins, Colorado, USA, June 23-25, 1999, IEEE Computer Society Press 1999, 402-407
S. Frantz, K. Rohr, H.S. Stiehl, S.-I. Kim, and J. Weese, ``Validating Point-based MR/CT Registration Based on Semi-automatic Landmark Extraction'', Proc. Computer Assisted Radiology and Surgery (CARS'99), Paris, France, June 23-26, 1999, H.U. Lemke, M.W. Vannier, K. Inamura, and A.G. Farman (Eds.), Elsevier Science Amsterdam Lausanne 1999, 233-237
K. Rohr, M. Fornefett, and H.S. Stiehl, ``Approximating Thin-Plate Splines for Elastic Registration: Integration of Landmark Errors and Orientation Attributes'', Proc. 16th Internat. Conf. on Information Processing in Medical Imaging (IPMI'99), Visegrád, Hungary, June 28 - July 2, 1999, In Lecture Notes in Computer Science 1613, A. Kuba, M. Šámal, and A. Todd-Pokropek (Eds.), Springer-Verlag Berlin Heidelberg 1999, 252-265
M. Fornefett, K. Rohr, and H.S. Stiehl, ``Radial Basis Functions with Compact Support for Elastic Registration of Medical Images'', Proc. Internat. Workshop Biomedical Image Registration (WBIR'99), Bled, Slovenia, Aug. 30-31, 1999, F. Pernuš, S. Kovacic, H.S. Stiehl, and M. Viergever (Eds.), Slovenian Pattern Recognition Society, Ljubljana 1999, 173-185
H.S. Stiehl and K. Rohr, ``Navigated Brain Surgery - Part II: Computer Vision Aspects'', Proc. 11th European Congress of Neurosurgery, Sept. 19-24, 1999, European Association of Neurosurgical Societies (EANS), Copenhagen, Denmark, 1999, 951-954
S. Frantz, K. Rohr, and H.S. Stiehl, ``Improving the Detection Performance in Semi-automatic Landmark Extraction'', Proc. Second Internat. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'99), Cambridge, England, Sept. 19-22, 1999, Lecture Notes in Computer Science 1679, C.J. Taylor and A. Colchester (Eds.), Springer-Verlag Berlin Heidelberg 1999, 253-262
S. Frantz, K. Rohr, and H.S. Stiehl, ``Reducing False Detections in Extracting 3D Anatomical Point Landmarks'', Proc. Workshop Bildverarbeitung für die Medizin 1999 - Algorithmen, Systeme, Anwendungen -, DKFZ Heidelberg, Germany, 4./5. März 1999, Informatik aktuell, H. Evers, G. Glombitza, T. Lehmann, and H.-P. Meinzer (Eds.), Springer-Verlag Berlin Heidelberg 1999, 54-59
A. Hagemann, K. Rohr, H.S. Stiehl, U. Spetzger, and J.M. Gilsbach, ``A Biomechanical Model of the Human Head for Elastic Registration of MR-Images'', Proc. Workshop Bildverarbeitung für die Medizin 1999 - Algorithmen, Systeme, Anwendungen -, DKFZ Heidelberg, Germany, 4./5. März 1999, Informatik aktuell, H. Evers, G. Glombitza, T. Lehmann, and H.-P. Meinzer (Eds.), Springer-Verlag Berlin Heidelberg 1999, 44-48
A. Hagemann, K. Rohr, H.S. Stiehl, U. Spetzger, and J.M. Gilsbach, ``Intraoperative Image Correction Using a Biomechanical Model of the Human Head with Different Material Properties'', 21. DAGM-Symposium Mustererkennung 1999, 15.-17. Sept. 1999, Bonn/Germany, Informatik aktuell, W. Förstner, J.M. Buhmann, A. Faber, and P. Faber (Eds.), Springer-Verlag Berlin Heidelberg 1999, 223-231
A. Hagemann, K. Rohr, H.S. Stiehl, U. Spetzger, and J.M. Gilsbach, ``Intraoperative image correction using a biomechanical model of the human head based on elastic and fluid models'', Proc. 2. Workshop ``Navigierte Hirnchirurgie'' - Neurochirurgische und informatische Aspekte, Abstraktband, Neurochirurgische Klinik, Universität Erlangen-Nürnberg, Kopfklinikum, 13.-14. Okt. 1999, 35

1998

S. Frantz, K. Rohr, and H.S. Stiehl, ``Multi-Step Differential Approaches for the Localization of 3D Point Landmarks in Medical Images'', J. of Computing and Information Technology (CIT) 6:4 (1998) 435-447
W. Peckar, C. Schnörr, K. Rohr, H.S. Stiehl, and U. Spetzger, ``Linear and Incremental Estimation of Elastic Deformations in Medical Registration Using Prescribed Displacements'', Machine GRAPHICS & VISION 7:4 (1998) 807-829
S. Frantz, K. Rohr, and H.S. Stiehl, ``Refined Localization of Three-Dimensional Anatomical Point Landmarks Using Multi-Step Differential Approaches'', Medical Imaging 1998 - Image Processing (MI'98), Proc. SPIE Internat. Symposium, Vol. 3338, Part One, Febr. 23-26, 1998, San Diego/CA, K.M. Hanson (Ed.), 28-38
S. Frantz, K. Rohr, and H.S. Stiehl, ``Multi-Step Procedures for the Localization of 2D and 3D Point Landmarks and Automatic ROI Size Selection'', Proc. European Conf. on Computer Vision (ECCV'98), June 1998, Freiburg, Germany, Vol. I, Lecture Notes in Computer Science 1406, H. Burkhardt and B. Neumann (Eds.), Springer Berlin Heidelberg 1998, 687-703
M. Fornefett, K. Rohr, R. Sprengel, and H.S. Stiehl, ``Elastic Medical Image Registration using Orientation Attributes at Landmarks'', Proc. Medical Image Understanding and Analysis (MIUA'98), Univ. of Leeds/UK, 6-7 July 1998, E. Berry, D.C. Hogg, K.V. Mardia, and M.A. Smith (Eds.), University Print Services Leeds 1998, 49-52
M. Fornefett, K. Rohr, R. Sprengel, and H.S. Stiehl, ``Incorporating Orientation Attributes in Landmark-based Elastic Medical Image Registration'', Proc. Image and Multidimensional Digital Signal Processing (IMDSP'98), July 12-16, 1998, Alpbach/Austria, H. Niemann, H.-P. Seidel, and B. Girod (Eds.), infix Verlag Sankt Augustin 1998, 37-40
W. Peckar, C. Schnörr, K. Rohr, and H.S. Stiehl, ``Non-Rigid Image Registration Using a Parameter-Free Elastic Model'', Proc. British Machine Vision Conference (BMVC'98), Southampton/UK, Sept. 14-17, 1998, J.N. Carter and M.S. Nixon (Eds.), British Machine Vision Association 1998, 134-143
K. Rohr, ``Image Registration Based on Thin-Plate Splines and Local Estimates of Anisotropic Landmark Localization Uncertainties'', Proc. First Internat. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'98), Massachusetts Institute of Technology (MIT), Cambridge/MA, USA, Oct. 11-13, 1998, Lecture Notes in Computer Science 1496, W.M. Wells, A. Colchester, and S. Delp (Eds.), Springer Verlag Berlin Heidelberg 1998, 1174-1183
A. Hagemann, K. Rohr, and H.S. Stiehl, ``Theoretische und experimentelle Untersuchung eines Verfahrens zur Attributschätzung von Grauwertkanten in 2D CT/MR Bildern'', Proc. Workshop Bildverarbeitung für die Medizin 1998 - Algorithmen, Systeme, Anwendungen -, Aachen, Germany, 26./27. März 1998, Informatik aktuell, T. Lehmann, V. Metzler, K. Spitzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 1998, 29-33
T. Hartkens, K. Rohr, and H.S. Stiehl, ``Evaluierung der Detektionsleistung von 3D-Operatoren zur Ermittlung anatomischer Landmarken in tomographischen Bildern'', Proc. Workshop Bildverarbeitung für die Medizin 1998 - Algorithmen, Systeme, Anwendungen -, Aachen, Germany, 26./27. März 1998, Informatik aktuell, T. Lehmann, V. Metzler, K. Spitzer, and T. Tolxdorff (Eds.), Springer-Verlag Berlin Heidelberg 1998, 93-97
K. Rohr, H.S. Stiehl, M. Fornefett, S. Frantz, and A. Hagemann, ``Landmark-Based Elastic Registration of Human Brain Images'', Proc. Aachener Workshop ``Navigierte Hirnchirurgie'' - Neurochirurgische und informatische Aspekte, Abstraktband, Neurochirurgische Universitätsklinik der RWTH Aachen, 4./5. Sept. 1998, 31-32
T. Hartkens, K. Rohr, and H.S. Stiehl, ``Untersuchung der Detektionsleistung von 3D-Operatoren zur Ermittlung von Punktlandmarken in MR- und CT-Bildern'', 20. DAGM-Symposium Mustererkennung, 29. Sept.- 1. Okt. 1998, Stuttgart/Germany, Informatik aktuell, P. Levi, R.-J. Ahlers, F. May, and M. Schanz (Eds.), Springer-Verlag Berlin Heidelberg 1998, 211-218
M. Fornefett, K. Rohr, R. Sprengel, and H.S. Stiehl, ``Orientation Constraints in Point-Based Elastic Image Registration'', 20. DAGM-Symposium Mustererkennung, 29. Sept.- 1. Okt. 1998, Stuttgart/Germany, Informatik aktuell, P. Levi, R.-J. Ahlers, F. May, and M. Schanz (Eds.), Springer-Verlag Berlin Heidelberg 1998, 533-539

1997

K. Rohr, ``Human Movement Analysis Based on Explicit Motion Models'', Chapter 8 in Motion-Based Recognition, M. Shah and R. Jain (Eds.), Computational Imaging and Vision Series, Vol. 9, Kluwer Academic Publishers, Dordrecht Boston London 1997, 171-198
K. Rohr, ``On the Precision in Estimating the Location of Edges and Corners'', J. of Mathematical Imaging and Vision 7:1 (1997) 7-22
K. Rohr, ``On 3D Differential Operators for Detecting Point Landmarks'', Image and Vision Computing 15:3 (1997) 219-233
C. Drewniok and K. Rohr, ``Exterior Orientation - An Automatic Approach Based on Fitting Analytic Landmark Models'', Special Theme Issue ``Automatic Image Orientation'', ISPRS J. of Photogrammetry & Remote Sensing 52 (1997) 132-145
C. Drewniok and K. Rohr, ``Model-Based Detection and Localization of Circular Landmarks in Aerial Images'', Internat. J. of Computer Vision 24:3 (1997) 187-217
K. Rohr, ``Landmark-Based Elastic Matching of 3D Medical Images'', Second Germany-Korea Joint Conf. on Advanced Medical Image Processing, Darmstadt - Heidelberg - Hamburg, June 19-24, 1997, Fraunhofer Institute for Computer Graphics, Darmstadt, Germany, Institute of Mathematics and Computer Science in Medicine (IMDM), University Hospital Eppendorf (UKE), Hamburg, 1997, 60-63
W. Beil, K. Rohr, and H.S. Stiehl, ``Investigation of Approaches for the Localization of Anatomical Landmarks in 3D Medical Images'', Proc. Computer Assisted Radiology and Surgery (CAR'97), Berlin, Germany, June 25-28, 1997, H.U. Lemke, M.W. Vannier, and K. Inamura (Eds.), Elsevier Amsterdam Lausanne 1997, 265-270
K. Rohr, R. Sprengel, and H.S. Stiehl, ``Incorporation of Landmark Error Ellipsoids for Image Registration based on Approximating Thin-Plate Splines'', Proc. Computer Assisted Radiology and Surgery (CAR'97), Berlin, Germany, June 25-28, 1997, H.U. Lemke, M.W. Vannier, and K. Inamura (Eds.), Elsevier Amsterdam Lausanne 1997, 234-239
W. Peckar, C. Schnörr, K. Rohr, and H.S. Stiehl, ``Two-Step Parameter-Free Elastic Image Registration with Prescribed Point Displacements'', Proc. 9th Internat. Conf. on Image Analysis and Processing (ICIAP'97), 17-19 Sept. 1997, Florence/Italy, Lecture Notes in Computer Science 1310, A. Del Bimbo (Ed.), Vol. I, Springer-Verlag Berlin Heidelberg 1997, 527-534
K. Rohr and H.S. Stiehl, ``Characterization and Localization of Anatomical Landmarks in Medical Images'', Proc. 1st Aachen Conf. on Neuropsychology in Neurosurgery, Psychiatry, and Neurology, Dec. 12-14, 1997, Aachen/Germany, B.O. Hütter and J.M. Gilsbach (Eds.), Verlag der Augustinus Buchhandlung 1997, 9-12
C. Drewniok and K. Rohr, ``Lokalisation planarer Objekte durch Adaption parametrischer Grauwertmodelle'', 16. Wissenschaftlich-Technische Jahrestagung der DGPF: Digitale Bildverarbeitung zur Erfassung geometrischer und thematischer Informationen, 18.-20. Sept. 1996, Oldenburg, F.K. List (Ed.), Publikationen der Deutschen Gesellschaft für Photogrammetrie und Fernerkundung, Band 5, Berlin 1997, 63-72
K. Rohr, H.S. Stiehl, R. Sprengel, W. Beil, T.M. Buzug, J. Weese, and M.H. Kuhn, ``Landmark-Based Elastic Matching of Tomographic Images'', Proc. Freiburger Workshop 1997: Digitale Bildverarbeitung in der Medizin, Freiburg, Germany, March 10-11, 1997, B. Arnolds, H. Müller, D. Saupe, and T. Tolxdorff (Eds.), Albert-Ludwigs-Universität Freiburg, 163-168
S. Frantz, K. Rohr, and H.S. Stiehl, ``On the Localization of 3D Anatomical Point Landmarks in Medical Imagery Using Multi-step Differential Approaches'', 19. DAGM-Symposium Mustererkennung, 15.-17. Sept. 1997, Braunschweig/Germany, Informatik aktuell, E. Paulus and F.M. Wahl (Eds.), Springer-Verlag Berlin Heidelberg 1997, 340-347

1996

C. Drewniok and K. Rohr, ``Automatic Exterior Orientation of Aerial Images in Urban Environments'', Proc. ISPRS Congress, Vienna, July 1996, Internat. Archives of Photogrammetry and Remote Sensing, Vol. XXXI, Part B3, 146-152
R. Wiemker, K. Rohr, L. Binder, R. Sprengel, and H.S. Stiehl, ``Application of Elastic Registration to Imagery from Airborne Scanners'', Proc. ISPRS Congress, Vienna, July 1996, Internat. Archives of Photogrammetry and Remote Sensing, Vol. XXXI, Part B4, 949-954
A. Heyden and K. Rohr, ``Evaluation of Corner Extraction Schemes Using Invariance Methods'', Proc. 13th Internat. Conf. on Pattern Recognition (ICPR'96), Vienna, Austria, Aug. 25-29, Vol. I, IEEE Computer Society Press 1996, 895-899
K. Rohr, H.S. Stiehl, R. Sprengel, W. Beil, T.M. Buzug, J. Weese, and M.H. Kuhn, ``Point-Based Elastic Registration of Medical Image Data Using Approximating Thin-Plate Splines'', Proc. 4th Internat. Conf. Visualization in Biomedical Computing (VBC'96), Hamburg, Germany, Sept. 22-25, 1996, Lecture Notes in Computer Science 1131, K.H. Höhne and R. Kikinis (Eds.), Springer Berlin Heidelberg 1996, 297-306
R. Sprengel, K. Rohr, and H.S. Stiehl, ``Thin-Plate Spline Approximation for Image Registration'', Proc. 18th Internat. Conf. IEEE Engineering in Medicine and Biology Society (EMBS'96), Oct. 31 - Nov. 3, 1996, Amsterdam, The Netherlands,
L. Binder, K. Rohr, R. Sprengel, and H.S. Stiehl, ``Bildregistrierung mit interpolierenden `Thin-Plate Splines' und Bezüge zur linearen Elastizitätstheorie'', 18. DAGM-Symposium Mustererkennung, 11.-13. Sept. 1996, Heidelberg/Germany, Informatik aktuell, B. Jähne, P. Geißler, H. Haußecker, and F. Hering (Eds.), Springer-Verlag Berlin Heidelberg 1996, 281-288
T. Hartkens, K. Rohr, and H.S. Stiehl, ``Evaluierung von Differentialoperatoren zur Detektion charakteristischer Punkte in tomographischen Bildern'', 18. DAGM-Symposium Mustererkennung, 11.-13. Sept. 1996, Heidelberg/Germany, Informatik aktuell, B. Jähne, P. Geißler, H. Haußecker, and F. Hering (Eds.), Springer-Verlag Berlin Heidelberg 1996, 637-644
K. Rohr, H.S. Stiehl, R. Sprengel, W. Beil, T.M. Buzug, J. Weese, and M.H. Kuhn, ``Nonrigid Registration of Medical Images Based on Anatomical Point Landmarks and Approximating Thin-Plate Splines'', Proc. Aachener Workshop 1996: Bildverarbeitung für die Medizin - Algorithmen, Systeme, Anwendungen -, Aachen, Germany, Nov. 8-9, 1996, T. Lehmann, I. Scholl, and K. Spitzer (Eds.), Verlag der Augustinus Buchhandlung 1996, 41-46

1995

G. Herzog and K. Rohr, ``Integrating Vision and Language: Towards Automatic Description of Human Movements'', Proc. 19th Conf. on Artificial Intelligence, KI-95: Advances in Artificial Intelligence, Sept. 1995, Bielefeld/Germany, Lecture Notes in Artificial Intelligence 981, I. Wachsmuth, C.-R. Rollinger, and W. Brauer (Eds.), Springer-Verlag Berlin Heidelberg 1995, 259-268
C. Drewniok and K. Rohr, ``High-Precision Localization of Circular Landmarks in Aerial Images'', 17. DAGM-Symposium Mustererkennung, Sept. 1995, Bielefeld/Germany, Informatik aktuell, G. Sagerer, S. Posch, and F. Kummert (Eds.), Springer-Verlag Berlin Heidelberg 1995, 594-601

1994

K. Rohr, ``Towards Model-based Recognition of Human Movements in Image Sequences'', Computer Vision, Graphics, and Image Processing: Image Understanding 59:1 (1994) 94-115
K. Rohr, ``Localization Properties of Direct Corner Detectors'', J. of Mathematical Imaging and Vision 4:2 (1994) 139-150
J.H. Rieger and K. Rohr, ``Semi-algebraic solids in 3-space: a survey of modelling schemes and implications for view graphs'', Image and Vision Computing 12:7 (1994) 395-410

1993

K. Rohr and C. Schnörr, ``An Efficient Approach to the Identification of Characteristic Intensity Variations'', Image and Vision Computing 11:5 (1993) 273-277
K. Rohr, ``Incremental Recognition of Pedestrians from Image Sequences'', Proc. IEEE Conf. on Computer Vision and Pattern Recognition (CVPR'93), New York/NY, USA, June 15-17, 1993, 8-13
K. Rohr, ``Lokalisierungseigenschaften direkter Ansätze zur Ermittlung von Grauwertecken'', 15. DAGM-Symposium Mustererkennung, 27.-29. Sept. 1993, Lübeck, Informatik aktuell, S.J. Pöppl and H. Handels (Eds.), Springer-Verlag Berlin Heidelberg 1993, 647-654

1992

K. Rohr, ``Modelling and Identification of Characteristic Intensity Variations'', Image and Vision Computing 10:2 (1992) 66-76
K. Rohr, ``Recognizing Corners by Fitting Parametric Models'', Internat. J. of Computer Vision 9:3 (1992) 213-230

1990

K. Rohr, ``Über die Modellierung und Identifikation charakteristischer Grauwertverläufe in Realweltbildern'', 12. DAGM-Symposium Mustererkennung, 24.-26. Sept. 1990, Oberkochen-Aalen, Germany, Informatik-Fachberichte 254, R.E. Großkopf (Eds.), Springer-Verlag Berlin Heidelberg 1990, 217-224
K. Rohr and H.-H. Nagel, ``Modellgestützte Bestimmung des Bewegungszustandes von Fußgängern in Realweltbildfolgen'', 12. DAGM-Symposium Mustererkennung, 24.-26. Sept. 1990, Oberkochen-Aalen, Germany, Informatik-Fachberichte 254, R.E. Großkopf (Eds.), Springer-Verlag Berlin Heidelberg 1990, 52-58
D. Bister, K. Rohr, and C. Schnörr, ``Automatische Bestimmung der Trajektorien von sich bewegenden Objekten aus einer Bildfolge'', 12. DAGM-Symposium Mustererkennung, 24.-26. Sept. 1990, Oberkochen-Aalen, Germany, Informatik-Fachberichte 254, R.E. Großkopf (Eds.), Springer-Verlag Berlin Heidelberg 1990, 44-51

1989

K. Rohr, ``Auf dem Wege zu modellgestütztem Erkennen von bewegten nicht-starren Körpern in Realweltbildfolgen'', 11. DAGM-Symposium Mustererkennung, 2.-4. Okt. 1989, Hamburg, Informatik-Fachberichte 219, H. Burkhardt, K.H. Höhne, B. Neumann (Eds.), Springer-Verlag Berlin Heidelberg 1989, 324-328

Contact: E-Mail (Last update: 18/03/2024)

11/10/2014 Excellent result at Particle Tracking Challenge, Nature Methods 2014

11/06/2014 William J. Godinez received the Thomas Gessmann PhD Prize 2014

08/27/2014 Bitplane ISBI/IEEE Attendance Award, 2nd Cell Tracking Challenge, ISBI 2014

04/20/2013 Excellent result at 1st Cell Tracking Challenge, ISBI 2013

03/12/2013 Prize for the best scientific paper at BVM 2013

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